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5 protocols using μ slide 8 well glass bottom chamber

1

Quantifying Cell Adhesion Footprint

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The μ-Slide 8 Well Glass Bottom chamber (ibidi) was coated with recombinant human ICAM-1-Fc (5 μg/mL) at room temperature for 3 h. Differentiated MFN2 KD and control HL60 cells (2 × 106 cells/mL) cells were incubated with CellTracker Orange CMRA (4 μM) at room temperature for 1 h. After 2 washes with PBS, cells were incubated with unconjugated mouse anti-human CD18 blocking Ab (TS1/18, 4 μg/mL) or mouse IgG1κ isotype control (4 μg/mL) at room temperature for 10 min. After 2 washes with PBS, cells were resuspended in PBS plus 1 μM Mn2+, added into the chamber, and centrifuged at 500 × g at room temperature for 5 min to induce spreading. Cells were fixed with 1% PFA at room temperature for 5 min and washed twice with PBS to remove unadhered cells. Total internal reflection fluorescence (TIRF) images (Fig. 4A) were acquired with an iX83 Olympus inverted microscope equipped with a SAFe Light module (Abbelight, includes four color lasers, λ = 405 nm, 488 nm, 532 nm, and 640 nm), sCMOS fusion cameras (Hamamatsu), and a 100× NA 1.5 oil objective. A TIRF incidence angle of θ = 70° was used. The area of cell footprint was quantified by the “analyzing particles” function in FIJI-ImageJ258 (link) (Fig. 4B).
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2

Actin Polymerization Assay in HL60 Cells

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Differentiated MFN2 KD and control HL60 cells (5 × 105 cells/mL) were incubated with fMLP (100 nM) or PMA (100 nM) or vehicle control at room temperature for 20 min. Cells were fixed with 1% PFA at room temperature for 10 min, washed twice with intracellular staining perm wash buffer plus 5% goat serum, and stained with AF568-conjugated phalloidin (5 U/mL) in intracellular staining perm wash buffer plus 5% goat serum at room temperature for 30 min. After 2 washes with PBS, cells were added into μ-Slide 8 Well Glass Bottom chamber (ibidi) pre-coated with 0.01% Poly-l-lysine (at 4°C overnight) and centrifuged at 500 × g at room temperature for 5 min to let the cells settle and adhere. Epifluorescence images (Fig. 3A)were acquired by using an iX83 Olympus inverted microscope equipped with the SAFe Light module (Abbelight, includes four color lasers, λ = 405 nm, 488 nm, 532 nm, and 640 nm), sCMOS fusion cameras (Hamamatsu), and a 100× NA 1.5 oil objective. The phalloidin median fluorescence intensity (MFI), which reflects the actin polymerization, was quantified by the “analyzing particles” function in FIJI-ImageJ258 (link) (Fig. 3B).
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3

Live-cell Microscopy for Cellular Dynamics

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Unless otherwise indicated, cells were imaged using a Quorum spinning disk microscope with a 10× or 20×, 1.0 NA objectives, or a 63×, 1.4 NA oil immersion objective (Leica DMI6000B inverted fluorescence microscope with a Yokogawa spinning disk head and Hamamatsu ORCA Flash4 sCMOS camera) and Volocity 6.3 acquisition software (Quorum). Confocal z-stacks of 0.3 μm were acquired. Images were analyzed with the Volocity software or Fiji v2.14.0 (ImageJ) and then imported and assembled in Adobe Illustrator v25.3.1 for labeling. For live cell imaging, cells were seeded in μ-Slide 8-well glass bottom chambers (ibidi). Twenty-four hours after seeding, growth media was replaced with live cell imaging media (RPMI with l-Glutamine and 25 mM HEPES (Wisent) supplemented with 10% FBS (Wisent)) containing the respective treatment condition. Cells were imaged at 37 °C using a Leica DMI 6000B inverted fluorescence microscope with a Yokogawa spinning disk head and Hamamatsu ImagEM X2 camera. Images were taken with a z-spacing of 0.5 μm. For invasion ruffle volume measurements, confocal z-stacks of 0.3 μm were acquired.
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4

Flp-In T-REx 293 Cells for Affinity Purification

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Henle 407 and HEK 293T cells were obtained from the American Type Culture Collection (ATCC). Although Henle 407 cell cultures have been shown to contain HeLa cell chromosomes, our Henle 407 cells were used between passages 5–25 and maintained a distinct morphology relative to HeLa cells. Flp-In T-REx 293 cells were obtained from Invitrogen. Cell cultures were maintained in growth medium (DMEM, high glucose (HyClone) supplemented with 10% FBS (Wisent)) at 37 °C in 5% CO2.
Using the Flp-In system (Invitrogen), Flp-In T-REx 293 cells stably expressing FLAGBirA* alone or SopD-FLAGBirA* were generated. After selection (DMEM + 10% FBS + 200 ug/ml Hygromycin B), 5 × 150 cm2 plates of sub-confluent (80%) cells were incubated for 24 h in complete media supplemented with 1 ug/ml tetracycline (Sigma) before harvesting cells.
For microscopy-based experiments, Henle 407 cells were seeded in 24-well tissue culture plates containing 1 cm coverslips at a concentration of 6 × 104 cells/well 24 h or 3 × 104 cells/well 48 h before use. For live cell imaging, cells were seeded in μ-Slide 8-well glass bottom chambers (ibidi) 24 h before use at a concentration of 4.0 × 104 cells/well.
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5

Doxycycline-Induced Nuclear Staining

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Cells were grown in μ-Slide 8-well glass-bottom chambers (Ibidi) and treated with 2 μg/mL doxycycline for 24 h. Cells were incubated with DAPI (Vectashield) for 10 min to stain nuclei. Images were obtained using LSM880 Zeiss Microscope.
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