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4 protocols using rabbit α g6pdh

1

Antibody Validation for Cell Signaling

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The antibodies used are as follows: rabbit α-RPS6 (ab40820) and rabbit α-Vph1 (ab113683) from Abcam; rabbit α-Phospho S6 (#2211), rabbit α-Phospho-p44/42 MAPK (#4370), and rabbit α-Phospho-AMPKa (#9211) from Cell Signaling Technology; mouse α-Mpk1 (sc-133189), mouse α-Hog1 (sc-165978), mouse α-Myc clone 9E10 (sc-40), and mouse α-HA clone F-7 (sc-7392) from Santa Cruz Biotechnology; mouse α-GFP (Y1030) from UBPBio; and rabbit α-G6PDH (A9521) from Sigma-Aldrich.
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2

Whole-Cell Protein Extraction and Immunoblotting

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For whole cell extracts, cells were grown to exponential phase in SCD. 0.25 OD600 cells were pelleted, washed with dH20, and extracts were prepared by alkaline extraction (0.255M NaOH, 1% 2-mercaptoethanol) followed by precipitation in 9% trichloroacetic acid. Precipitates were washed with acetone, dried, and resuspended in 50μL Laemmli protein sample buffer prior to Western analysis.
Whole cell lysates or crude mitochondria extracts were freshly prepared and incubated at 70°C (to enable optimal detection of Mdi1*-2xFLAG) or 95°C for 10 minutes prior to SDS-PAGE, transferred to 0.2μm pore size PVDF membranes, and immunoblotted with the following primary antibodies: mouse α-FLAG (1:1000, Sigma F1804), rabbit α-G6PDH (1:2000, Sigma A9521), mouse α-Porin (1:2000; ThermoFisher 459500), rabbit α-Fzo1 (1:1000, a kind gift of Jodi Nunnari, Altos Labs), α-Aco1 (1:10000, a kind gift of Anju Sreelatha, UT Southwestern), α-Mia40 (1:10000, a kind gift of Anju Sreelatha, UT Southwestern). To detect Mdi1*-2xFLAG, goat anti-rabbit HRP (Sigma) was used (1:10000) and signal was visualized with SuperSignal West Femto Substrate (ThermoFisher). All other proteins were detected with secondary antibodies conjugated to DyLight800 (1:10000, ThermoFisher). Images were acquired with a ChemiDoc MP Imaging System (BioRad). Linear adjustments to images were made with Photoshop (Adobe).
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3

SDS-PAGE Analysis of Protein Expression

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Samples were boiled for 5 min and analyzed by SDS-PAGE, transferred to PVDF or nitrocellulose, and immunoblotted with the following primary antibodies at the indicated concentrations: mouse α-FLAG (1:1000, Sigma–Aldrich); mouse α-GFP (1:2000, UC Davis NeuroMab clone N86/8) or (1:2000, Thermo Fisher Scientific clone GF28R); rabbit α-mCherry (1:2000, Thermo Fisher Scientific); rabbit α-G6PDH (1:2000, Sigma–Aldrich); mouse α-Porin (1:1000, Thermo Fisher Scientific). The appropriate secondary antibodies conjugated to DyLight 680 and DyLight 800 (1:10000, Thermo Fisher Scientific) were used and visualized with the Odyssey Infrared Imaging System (LI-COR; Lincoln, NE). Linear adjustments to images were made using Adobe Photoshop.
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4

Whole-Cell Protein Extraction and Western Blotting

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Cells were grown to exponential phase in either YPD or synthetic dextrose medium, and whole-cell extracts were prepared from 0.25 OD600 cells by alkaline extraction (0.255 M NaOH and 1% 2-mercaptoethanol), followed by precipitation in 9% trichloroacetic acid. Precipitates were washed with acetone, dried, and resuspended in 50 µl MURB protein sample buffer (100 mM MES, pH 7.0, 1% SDS, 3 M urea, and 10% 2-mercaptoethanol) before Western analysis. Samples were boiled for 1–2 min, analyzed by SDS-PAGE, transferred to nitrocellulose, and immunoblotted with the following primary antibodies: mouse α-HA (26183; Thermo Fisher Scientific); rabbit α-GFP (ab290; Abcam), or rabbit α-G6PDH (A9521; Sigma-Aldrich). The appropriate secondary antibodies conjugated to DyLight 680 and 800 (Thermo Fisher Scientific) were used and visualized with the Odyssey Infrared Imaging System (LI-COR). Linear adjustments to images were made using Adobe Photoshop.
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