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5 protocols using hek293t cells

1

Cultivation of HEK293T Cells and Viral Samples

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HEK293T cells were purchased from BeNa Culture Collection, China. Cells were cultured in a Dulbecco’s modified Eagle’s medium (DMEM; Gibco, New York, NY, USA) containing 10% fetal bovine serum (FBS; Gibco) and 1% penicillin-streptomycin solution (Hyclone Laboratories, Logan, UT, USA).
The NiVpv and HeVpv used in the study were kindly gifted from Dr. Youchun Wang (Division of HIV/AIDS and Sexually Transmitted Virus Vaccines, National Institutes for Food and Drug Control (NIFDC), Beijing, China).
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2

Investigating FOXO3-miR-200a-3p Interaction

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FOXO3 wild-type and mutant (FOXO3-wt/mut) primers were designed at the predicted binding sites of the FOXO3 3′-UTR to miR-200a-3p and further synthesized by RT-qPCR. Subsequently, the above FOXO3 wild-type fragment of interest and mutant fragment were ligated separately with pMIR-REPORTTM vector using T4 ligase. The luciferase activity was assessed using a Dual-Luciferase® Reporter Assay System (Promega, Madison, WI, USA). Using Lipofectamine 2000, HEK293T cells (BeNa Culture Collection, Shanghai, China) were transfected with miR-200a-3p mimics/NC and FOXO3-WT/MUT vector plasmids at room temperature. Then, the above mixture was detected luciferase activity.
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3

Validation of miR-145-5p Targeting of PCAT1 and TLR4

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The PCAT1 and TRL4 sequences containing the predicted potential miR‐145‐5p binding sites were amplified. The PCAT1‐WT and TRL4‐WT plasmids were constructed using a PCR method. PCAT1‐MUT and TLR4‐MUT were generated by site‐directed mutagenesis, replacing the first six ribonucleotides of the miR‐145‐5p complementary sequence. HEK293T cells (BeNa Culture Collection, China) were grown in 24‐well plates and cotransfected with miR‐145‐5p mimics and PCAT1‐WT, miR‐145‐5p mimics and PCAT1‐MUT, control mimics and PCAT1‐WT, control mimics and PCAT1‐MUT, miR‐145‐5p mimics and TLR4‐WT, miR‐145‐5p mimics and TLR4‐MUT, control mimics and TLR4‐WT, control mimics and TLR4‐MUT. The media was replaced after 6 hours; 24 hours after cotransfection, the Dual‐Luciferase Reporter Gene Test Kit (Promega, Fitchburg, WI, USA) was used to detect the luciferase activities in different groups. The firefly and the renal luciferase reagent were added to detect the luciferase activity of each group.
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4

Dual-Luciferase Assay for miRNA Target Validation

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Wild‐type (WT) and mutated (MUT) 3′‐UTR of AK139328 was generated by PCR. The sequences after amplification were linked with Pmir‐GLO dual‐luciferase miRNA target expression vectors (Promega, Madison, WI, USA). HEK293T cells (BeNa Culture Collection, Shanghai, China) were cultured at 37°C with 90% high‐glucose DMEM (4 μL glutamine‐sodium pyruvate), 10% FBS and 5% CO2. After seeded onto 24‐well plates, the cells were cotransfected with miR‐204‐3p mimics or control mimics.
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5

Stable Knockdown of circ_0001944 in NSCLC Cells

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To generate NSCLC cells (A549 and H1975) with stable knockdown of circ_0001944, a short hairpin (sh) RNA targeting circ_0001944 (sh-circ_0001944) and matching negative control (NC) (sh-NC) were synthesized by Sangon (Shanghai), followed by inserting into the pLKO.1 vector (Thermo Fisher), respectively. Subsequently, these produced vectors were transfected into HEK293T cells (BeNa Culture Collection) together with lentiviral packaging plasmids using the Lipofectamine 3000 reagent (Thermo Fisher), respectively. 72 h later, these lentiviral particles were collected and then used to infect NSCLC cells. These NSCLC cells were then cultured in the cell medium containing puromycin (2 μg/mL) (Sigma) to select NSCLC cells with a stable knockdown of circ_0001944.
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