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10 protocols using 2 3 dimethylquinoxaline

1

Advanced Glycation End-products Quantification

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CML, CEL,
MG-H1,
G-H1, MOLD, GOLD, N(6)-{2-[(5-amino-5-carboxypentyl)amino]-2-oxoethyl}lysine
(GOLA), glycolic acid lysine amide (GALA), pyrraline, argpyrimidine
(Arg-p), pentosidine, d4-CML, and furosine were purchased
form Iris Biotech (Marktredwitz, Germany). MGO (40% in aqueous solution),
2,3-hexanedione, arginine, lysine, d4-lysine, LAN, 2-methylquinoxaline,
2,3-dimethylquinoxaline, and furosine were purchased from Sigma (St.
Louis, MO, USA). GO (40% in aqueous solution), diacetyl (DA), quinoxaline,
and o-phenylenediamine (OPD) were purchased from
Alfa Aesar (Great Britain, UK). 2-(1′,2′,3′,4′-Tetrahydroxybutyl)quinoxaline
was purchased from Biosynth Carbosynth (St. Gallen, Switzerland).
Glucosone, 3-deoxygalactosone (3-DGal), and 3-DG were purchased from
Cayman (Ann Arbor, MI, USA). 2-(2′,3′,4′-trihydroxybutyl)quinoxaline
was purchased from Toronto Research Chemicals (North York, Canada).
Perchloric acid was purchased from Honeywell Fluka (Charlotte, NC,
USA). All solvents used in this study are analytical or LC–MS
grade and sourced from Sigma.
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2

Glycation Inhibition and Antioxidant Assay

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Bovine serum albumin (BSA), D-fructose, D-ribose, methylglyoxal (MGO), L-alanine, aminoguanidine hydrochloride (AG), 1,2-phenylenediamine (PD), 2,3-dimethylquinoxaline (DQ), α-cyano-4-hydroxy-cinnamic acid, 2,2-diphenyl-1-picrylhydrazyl (DPPH), trifluoroacetic acid (TFA), ascorbic acid, 2,2′-bipyridyl, sodium dodecyl sulfate, and iron (II) sulfate were purchased from Sigma-Aldrich Chemical Co. (St. Louis, MO, USA). G.K. peptide was purchased from Bachem Americas, Inc. (Torrance, CA, USA) and all HPLC solvents were purchased from Thermo Fisher Scientific (Rockford, IL, USA).
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3

Inflammatory Bowel Disease Treatment Protocol

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2,3-Dimethylquinoxaline, indomethacin, esomeprazole, and carboxymethyl cellulose sodium (CMC-Na) were acquired from Sigma-Aldrich in St. Louis, MO, USA. The research also used various ELISA kits, including Rat TNF-α ELISA Kit, Rat Interferon Alpha kit (Cat No. MBS267050), Rat Prostaglandin E2 (PGE2) ELISA Kit (Cat No. MBS262150), Rat Mucin ELISA (Cat No MBS1600651), Rat Interleukin 6 (IL-6) ELISA Kit (Cat No. MBS269892), Rat Inducible Nitric Oxide Synthase (iNOS) Elisa kit (Catalog Number: MBS723326), Rat Cyclooxygenase 2 (COX2) ELISA kit (Catalog Number: MBS725633), and Rat IL-1 beta ELISA Kit (Catalog # MBS825017), all of which were also obtained from Sigma-Aldrich in St. Louis, MO, USA.
The study utilized commercially available chemicals like formalin, phosphate buffer, and other necessary compounds, all chosen for their high purity grades. It’s important to note that all chemicals used in the research were of analytical grade.
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4

Quantification of Advanced Glycation Endproducts

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d-Glucose (≥99.5%), l-lysine (≥99%), oleic acid (≥99%), linoleic acid (≥99%), linolenic acid (≥99%), 3-deoxyglucosone (≥75%), quinoxaline (≥99%), 2-methylquinoxaline (≥97%), 2,3-dimethylquinoxaline (≥97%), o-phenylenediamine (≥98%), diethylenetriaminepentaacetic acid (≥98%), formic acid (LC-MS additives), acetic acid of HPLC grade and sodium acetate of HPLC grade were obtained from Sigma-Aldrich (St. Louis, MO, USA). Nε-Carboxymethyllysine and Nε-carboxyethyllysine standards as well as d4-Nε-carboxymethyllysine and d4-Nε-carboxyethyllysine standards were purchased from Toronto Research Chemicals Inc. (North York, Ontario, Canada). Pyrraline (≥99%) was purchased from PolyPeptide Group (Strasbourg, France). N-(1-Deoxy-d-fructosyl)-l-lysine (≥99%) was synthesized by HitGen Ltd (Chengdu, China). Triolein (≥99%), trilinolein (≥99%), potassium phosphate dibasic of HPLC grade and potassium phosphate monobasic of HPLC grade were obtained from Shanghai Aladdin Biochemical Technology Co. (Shanghai, China). Methanol (MS grade) was acquired from Merck KGaA Group (Darmstadt, Germany). Deionized water was provided by the Watson Group Ltd. (Hongkong, China). Syringe filters (nylon, 0.22 μm) were bought from the Waters Corporation (Milford, MA, USA).
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5

Cocoa and Coffee Compounds Extraction

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GO aqueous solution
(GO, 40%), MGO aqueous solution (MGO, 40%), DA, quinoxaline (QX),
2-methylquinoxaline (2-MQX), 2,3-dimethylquinoxaline (2,3-MQX), pyridoxamine
(PM) dihydrochloride , diethylenetriaminepentacetic acid (DETAPAC), o-phenylenediamine (OPD), ethylenediaminetetracetic acid
(EDTA), 3-caffeoylquinic acid (3-CQA), caffeic acid (CA), ferulic
acid (FA), and Pronase E were purchased from Sigma-Aldrich (St. Louis,
MO). Hydrochloric acid (37%), sodium hydroxide, disodium hydrogen
phosphate dihydrate, sodium dihydrogen phosphate dihydrate, and acetic
acid were obtained from Merck (Darmstadt, Germany). Dried cocoa beans
(Forastero) were provided by CACEP (Villahermosa, Mexico). Dark roasted
arabica coffee beans and bread crumbs were purchased from a local
supermarket.
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6

Quantification of Carbonyl Compounds and Amino Acids

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D-Glucose, D-fructose, D-maltose, D-lactose, L-lysine, L-serine, L-threonine, L-cysteine, L-norvaline, glyoxal, methylglyoxal, diacetyl, quinoxaline, 2-methylquinoxaline, 2,3-dimethylquinoxaline, o-phenylenediamine dihydrochloride, 1-methylpyrazole, C8-C20 alkane standard, methyl cinnamate, and sodium chloride were purchased from Sigma-Aldrich (St. Louis, MO). Water and ethyl acetate were obtained from J.T. Baker (Philipsburg, NJ, USA). All solutions were stored at 4 °C until analysis. Divinylbenzene/Carboxen/Polydimethylsiloxane (DVB/CAR/PDMS, 50 μm film thickness) solid phase microextraction (SPME) fiber, polypropylene hold caps, and polytetrafluoroethylene (PTFE)/silicone septa were purchased from Supelco Inc. (Belfonte, PA, USA).
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7

Anti-Oxidant and Anti-Inflammatory Assay Protocol

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Aminoguanidine hydrochloride (AG), bovine serum albumin (BSA), d-fructose, d-ribose, 2,3-dimethylquinoxaline (DQ), gallic acid (GA), resveratrol (RESV), butylated hydroxytoluene (BHT), 2,2-diphenyl-1-picrylhydrazyl (DPPH), methylglyoxal (MGO), 1,2-phenylenediamine (PD), hydrogen peroxide (H2O2), trifluoroacetic acid (TFA), lipopolysaccharide (LPS), 2’,7’-dichlorofluorescin diacetate reagent (DCFDA), XAD-16 Amberlite resin, and HPLC-grade methanol were purchased from Sigma-Aldrich Chemical Co. (St. Louis, MO, USA). Beta amyloid 1-42 (Aβ) was purchased from AnaSpec Inc. (Fremont, CA, USA). Griess reagent was purchased from Promega Corp. (Madison, MI, USA).
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8

Quantification of Dicarbonyl Compounds in Oils

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Glyoxal (40 % in H2O, w/v), methylGlyoxal (40 % in H2O, w/v), diacetyl (97 %), 1-methylpyrazole (1-MP, 99 %), quinoxaline (Q, 99 %), 2-methylquinoxaline (2-MQ, 97 %), 2,3-dimethylquinoxaline (2,3-DMQ 97 %), sodium dihydrogen phosphate, and disodium hydrogen phosphate were purchased from Sigma-Aldrich (St. Louis, MO, USA). oPD (99 %) was purchased from Acros Organics (Geel, Belgium). HPLC-grade methanol, chloroform, and water were purchased from J.T. Baker (Phillipsburg, NJ, USA). Stock solutions (1000 mg/L) of Glyoxal, methylGlyoxal, diacetyl, and 1-MP (internal standard) were dissolved in HPLC-grade methanol and stored at − 20 °C prior to use. The working standard solutions were freshly prepared in sodium phosphate buffer solution (0.25 M, pH 7.6) and stored at 4 °C. The sesame and perilla oil samples were purchased from local supermarkets (Gyeonggi-do, Republic of Korea).
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9

Analytical Workflow for Carbonyl Compounds

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For all experiments, freshly prepared ultrapure water was taken from Sartorius arium® pro UV water treatment system (Sartorius AG, Göttingen, Germany). All chemicals were of analytical grade, unless noted otherwise. Acetonitrile, OPD, 2,3-dimethylquinoxaline, MGO, GO, 2-KDG, 3-DG, 5-HMF, D-(+)-glucose monohydrate, methanol and ammonium acetate were purchased from Sigma (Sigma-Aldrich Chemie GmbH, Steinheim, Germany). 3-DGal was obtained from Cayman (Cayman Chemical Company, Ann Arbor, MI, USA). 3,4-DGE was purchased from Carbosynth (Carbosynth Ltd., Compton, Berkshire, UK).
The aqueous phase during LC-MS/MS measurement was a 5 mM ammonium acetate buffer solution adjusted to pH = 3.5 using 0.1% (v/v) acetic acid. It was freshly prepared in accordance to Thomas et al. [54 (link)]. The EZ-Test® [55 ] Biological Indicator from MesaLabs was used in order to test sterility.
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10

Analytical Methods for Dicarbonyl Compounds

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For all experiments, freshly prepared ultrapure water was taken from the Sartorius arium® pro UV water-treatment system (Sartorius AG, Göttingen, Germany). All chemicals were of analytical grade, unless noted otherwise. Acetonitrile, OPD, 2,3-dimethylquinoxaline, MGO, GO, 2-KDG, 3-DG, 5-HMF, D-(+)-glucose, methanol, and ammonium acetate (for mass spectrometry) were purchased from Sigma (Sigma-Aldrich Chemie GmbH, Steinheim, Germany). Acetic acid (glacial) 100%, toluene, sulfuric acid 95–98%, and ethanol 96% were obtained from Merck (Merck KGaA, Darmstadt, Germany). Furthermore, 1,4-dioxane and thymol were purchased from Roth (Carl Roth GmbH & Co. KG, Karlsruhe, Germany). The 3-DGal was obtained from Cayman (Cayman Chemical Company, Ann Arbor, Michigan, USA), and 3,4-DGE was purchased from Carbosynth (Carbosynth Ltd, Compton, Berkshire, UK).
thymol-sulfuric acid reagent was freshly prepared according to the monograph "Glucose" from the Ph. Eur., section C "Thin Layer Chromatography", subitem “Detection” [21 ]:
0.5 g of thymol were solved in a mixture of 5 mL of sulfuric acid and 95 mL of ethanol 96% (v/v). No cooling was required for this step.
The aqueous phase during LC-MS/MS measurement was a 5 mM ammonium acetate buffer solution adjusted to pH = 3.5 using 0.1% (v/v) acetic acid. It was freshly prepared according to Thomas et al (2013) [22 (link)].
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