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5 protocols using anti dj 1

1

Quantitative Western Blot Analysis

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Cell or tissue were lysed or homogenized in a lysis buffer containing 50 mM Tris-HCl (pH 8.0), 150 mM NaCl, 1% NP-40, and 12 mM Na-deoxycholate supplemented with protease and phosphatase inhibitors cocktail. Nuclei and cytosol were obtained as previously described [26 (link)]. Protein concentration was determined by the Lowry protein assay. Proteins were separated by SDS-PAGE and transferred to nitrocellulose membranes that were probed with the following antibodies: anti-nNOS (Santa Cruz), anti-SOD1 (Santa Cruz), anti-LDH (Santa Cruz), anti-poly-ADP-ribose polymerase 1 (PARP1), anti-actin (Santa Cruz), anti-tubulin (Sigma), anti-GSNOR (Thermo Scientific), anti-DJ-1 (Santa Cruz), anti-AKT (Santa Cruz), anti-phospho-AKT (Santa Cruz), anti-Nrf2 (Santa Cruz), and anti-H2B (Santa Cruz). After immunostaining with appropriate secondary horseradish peroxidase-conjugated goat anti-rabbit or anti-mouse antibodies, bands were revealed using the Amersham ECL detection system.
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2

Cell Lysis and Protein Immunoblotting

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Cell lysates were obtained using Tris-Triton lysis buffer [10 mM Tris-HCl (pH 7.4), 100 mM NaCl, 1 mM EDTA, 1 mM EGTA, 1% Triton X-100, 10% glycerol, and 0.1% SDS] supplemented with a protease inhibitor cocktail (Roche, Schlieren, Switzerland). Lysates were subjected to Bradford assay for protein quantification and denatured by adding 2 × Laemmli sample buffer (Bio-Rad Laboratories, Hercules, CA, USA) supplemented with 5% 2-Mercaptoethanol. The primary antibodies used in this study were as follows: anti-DJ-1 (Santa Cruz Biotechnology; sc-55572, 1:100, USA), anti-FLAG (Sigma-Aldrich; F3165, 1:20000, USA), anti-Myc (Invitrogen, 46–0603, 1:5000, USA), anti-tubulin (Sigma-Aldrich; T5168, 1:5000), anti-ubiquitin (Cell Signaling Technology; 3936, 1:1000, USA), anti-TOM20 (Abcam; ab186735, 1:2000, UK), anti-HTRA2 (Abcam; ab32092, 1:500), and anti-HSP60 (Santa Cruz Biotechnology; sc-59567, 1:800) antibodies. For cycloheximide (CHX) chase experiments, CHX and MG132 were purchased from Sigma-Aldrich.
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3

Nucleoprotein Extraction and Western Blot Analysis

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Nucleoproteins were extracted using a Nucleoprotein Extraction Kit (Sangon Biotech). Protein concentrations were determined according to the Bradford method using BCA assay reagent (Beyotime, Beijing, China). Samples (25 mg of protein) were loaded onto 8%–12% SDS-PAGE gels, and the proteins were then electrophoretically transferred to polyvinylidene fluoride membranes (EMD Millipore, Billerica, MA, USA). The membranes were blocked in 5% BSA and then incubated overnight at 4°C with the following antibodies: anti-DJ-1 (1:400; Santa Cruz), anti-HIF-α (1:1,000; Abcam), anti-p-AKT (1:150; Cell Signaling), anti-PI3K-p110α (1:500; Cell Signaling), and anti-PCNA (1:500; Cell Signaling). After the membranes were washed, they were incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies (Cell Signaling) at room temperature for 1 hour. The proteins were visualized using an enhanced chemiluminescence (ECL) Kit (Amersham Life Sciences, Arlington Heights, IL, USA) and exposed using a Chemiluminescence Imaging System (Fusion Solo S, Vilber, France).
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4

Coimmunoprecipitation of Protein Complexes

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Cells were lysed at 4 °C in extraction buffer (0.1 M NaCl, 20 mM HEPES pH 7.5, 1 mM EDTA, 5 mM NaF, 1 mM dithiothreitol, 0.3% Triton X-100, 5% glycerol, 0.25 mM phenylmethylsulfonyl fluoride, and complete protease inhibitor cocktail and phosphatase inhibitors). Homogenates were cleared by centrifugation (12,000 g, 10 min). Coimmunoprecipitation was performed according to previous techniques55 (link). In vitro IP was performed using purified recombinant proteins instead of the cell lysate. The antibodies used in the study were as follows: Anti-Myc (Cell Signaling, #2276); Anti-DDK (Origene, TA50011); Anti-DJ-1(Santa Cruz, sc27006 and sc32874; Cell Signaling, 2134S); Anti-β-Actin, #4970); Anti-GAPDH (Santa Cruz, sc-32233); Anti-mATP5G1/2/3(abcam, ab180149); Anti-ATPB (abcam, ab14730), and Anti-Bcl-xL(Cell Signaling, #2764); Anti-Puromycin (3RH11) (Kerafast, EQ0001).
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5

Quantification of DJ-1 Protein in Fibroblasts

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Proteins were extracted from cultured fibroblasts isolated from DJ1-KO #1 and DJ-1 KO #2 dogs. Total protein was quantified using bicinchoninic acid (Sigma) and 2 µg of each protein was used for western blot analysis. Anti-DJ-1 (Santa Cruz Biotechnology, Dallas, TX) was used as the primary antibody and anti-ACTB (ABclonal, Wuhan, China) was used as a control. Anti-mouse-horseradish peroxidase and anti-rabbit-horseradish peroxidase were used as the secondary antibodies. To detect the DJ-1 protein, bands were identified using an enhanced chemiluminescence solution (Bio-Rad, Hercules, CA, USA).
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