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12 protocols using ab53707

1

Immunofluorescence and IHC Staining of Skin Samples

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Lesional skin biopsy specimens from AD patients or OXA-induced mouse tissue specimens were fixed with a 12% formaldehyde solution and embedded in paraffin. For immunofluorescence staining, cells or skin biopsy specimens were incubated with the corresponding primary antibodies at 4°C overnight as follows: anti-K17 (1:1000; ab53707; Abcam), anti-CCL20 (1:300; ab9829; Abcam), anti-CD3 (1:500; ab16669; Abcam), anti-CD4 (1:500; ab183685; Abcam), anti-CD8 (1:500; ab22378; Abcam), anti-STAT3 (1:500; #124H6; Cell Signaling Technology) and anti-p-STAT3 (1:100; #9145; Cell Signaling Technology). After three washes with PBS, Cy3- or fluorescein isothiocyanate-conjugated secondary antibodies (1:200; BioLegend) were added, and Hoechst 33258 (Solarbio Technology, Beijing, China) was applied to label the nuclei. Samples were detected by a confocal microscope (LSM880; Carl Zeiss). For IHC staining, samples were incubated with 0.3% H2O2 for 10 min prior to staining with the corresponding primary antibodies: anti-K17 (1:1000; ab53707; Abcam) and anti-CCL20 (1:300; ab9829; Abcam) at 4°C overnight. Sections were subsequently incubated with an HRP-labeled goat anti-mouse/rabbit antibody (CoWin Biosciences) for 1 h at room temperature. 3,3’-Diaminobenzidine (Gene Tech, Shanghai, China) was used to detect biotinylated antibodies.
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2

Immunostaining of Psoriasis Skin Biopsies

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Biopsies obtained from the lesional skin of psoriasis patients and the skin of healthy controls or from IMQ-induced mice were fixed with a 12% formaldehyde solution and embedded in paraffin. For immunofluorescence staining, cells or skin biopsy specimens were incubated with the following primary antibodies overnight at 4°C: anti-K17 (1:1000, ab53707, Abcam, UK), anti-ENO1 (1:400, ab227978, Abcam, UK), and anti-Ki67 (1:1000, ab15580, Abcam, UK). After three washes with PBS, the cells were incubated with Cy3- or FITC-conjugated secondary antibodies (1:200, BioLegend, San Diego, USA), and Hoechst 33258 (1:1000, Solarbio Technology, China) was applied to all cells to label the nuclei. Samples were analyzed using a confocal microscope (LSM880, Carl Zeiss, Germany). For immunohistochemical staining, the tissue sections were incubated with 0.3% H2O2 for 10 min and then incubated with one of the following primary antibodies: anti-K17 (1:1000, ab53707, Abcam, UK) or anti-ENO1 (1:400, ab227978, Abcam, UK) overnight at 4°C. Sections were subsequently incubated with an HRP-labeled goat anti-mouse/rabbit antibody (CWBIO, Peking, China) for 1 h at room temperature. DAB (Gene Tech, Shanghai, China) was used to detect biotinylated antibodies.
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3

Immunofluorescence Staining of Cultured Cells

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Cultured cells were washed once with PBS and fixed in 4% paraformaldehyde (Electron Microscopy Sciences) for 10 min at RT. Samples were washed twice with PBS, and 0.1% Triton-X solution was added to promote membrane permeability by the antibody against cytokeratin 17. The samples were washed three times and then treated with CAS-Block solution (008120, Thermo Fisher Scientific, MA, U.S.A.) for 30 min at RT. Primary antibodies were diluted with CAS-Block solution and then applied to the samples, and the treated samples were incubated at 4 °C overnight. We used the following antibodies at a 1:100 dilution: anti-cytokeratin 17 antibody (ab53707, Abcam) and anti-CD99 antibody [EPR3096] (ab108297, Abcam), a 1:50 dilution: EZH2 antibody (21,800–1-AP, proteintech). After rinsing four times, for 15 min each time, in PBS, the samples were incubated at room temperature for 3 h with fluorescent secondary antibodies (Alexa-488, Invitrogen, CA, U.S.A. or CoraLite488, proteintech, IL, U.S.A.). The samples were observed under a fluorescence microscope after four final rinses, each for 15 min each time, in PBS.
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4

Immunofluorescence and Histology of Skin Nevi

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For immunofluorescence and histology, skin nevi collected from patients with TRα mutation and controls were OCT embedded, cut into 7-μm sections, and hematoxylin and eosin-stained. Slides were fixed with 4% paraformaldehyde and next permeabilized by placing them in 0.2% Triton X-100 in phosphate-buffered saline (PBS). Antigens were retrieved by incubation in 0.1 M citrate buffer (pH 6.0) or 0.5 M Tris buffer (pH 8.0) at 95°C for five minutes. Sections were blocked in 1% bovine serum albumin (BSA)/0.02% Tween/PBS for one hour at room temperature. Primary antibodies [anti-D3, whose specificity was validated using sections of epidermis from wild-type and D3KO mice (Supplementary Fig. S1), anti-cytokeratin 17 (Abcam; ab53707)], were incubated overnight at 4°C in blocking buffer followed by washing in 0.2% Tween/PBS. Secondary antibodies (Alexa Fluor; Thermo Fisher Scientific) were incubated at room temperature for one hour, followed by washing in 0.2% Tween/PBS. Images were acquired with an IX51 Olympus microscope and the Cell*F Olympus Imaging Software.
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5

Immunofluorescence Staining of Keratin Proteins

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Cells were cultured in glass bottomed microwell dish (P35G-0–14-C, MatTek Corporation) and stained with KRT14 (ab7800, Abcam), KRT19 (ab52625, Abcam), and KRT17 (ab53707, Abcam) primary antibody according to protocol described previously (2 (link)). Cells were stored in PBS in dark and images were taken within 48 hours of staining with Olympus FV1000 MPE inverted confocal microscope.
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6

Protein Expression Analysis of Breast Cancer Cell Lines

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The MDA-MB-468 and MDA-MB-231 cells were lysed according to the manufacturer’s instructions. The protein levels were measured using the BCA protein assay kit. Equal amounts of denatured proteins were transferred to a polyvinylidene fluoride membrane (Millipore, Billerica, USA) and incubated (4℃, overnight) with primary antibodies KRT17 (1:500, ab53707, Abcam, Cambridge, England), β-catenin (1:1 000, 9562, CST, Danvers, USA), APC (1:500, ab40778, Abcam, Cambridge, England), AXIN1 (1:1000, 2087, CST, Danvers, USA), GAPDH (1:5000, 10494-1-AP, Proteintech, Wuhan, China). The membrane was then incubated with goat anti-rabbit secondary antibody (1:10 000, SA00001-2, Proteintech, Wuhan, China). The blots were visualized using an enhanced chemiluminescence reagent ( ThermoFisher, Waltham, USA).
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7

Quantitative Protein Expression Analysis

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Western blot was performed as previously described (Jian et al., 2011) using the following antibodies: anti-K17 (ab53707; Abcam), anti-FASN (ab128856; Abcam), anti-SREBP-1 (PA1-337; Invitrogen), anti-PPARγ (81B8; Cell Signaling Technology), anti-β-tubulin (10068-1-AP; Proteintech), anti-β-actin (66009-1-Ig, Proteintech), anti-GAPDH (60004--1-Ig; Proteintech), and anti-lamin-A/C (sc-7292; Santa Cruz Biotechnology). Band intensities were quantified using Image Lab version 5.2.1 (Bio-Rad). Relative band intensities were normalized to that of the loading control.
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8

Antibody Characterization Protocol

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The anti-CD147 [EPR4052] (ab108317), anti-CD147 [MEM-M6/1] (ab666) and anti-Cytochrome C (ab53707) antibodies were purchased from Abcam Biotechnology, Inc. The anti-HSP60 (G0611) and anti-β-actin (E3013) antibodies were purchased from Santa Cruz Biotechnology, Inc., and the anti-GAPDH (6004-1) antibody was purchased from Proteintech, Inc.
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9

Immunoblotting of Cellular Proteins

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Whole proteins in HaCaT cells were extracted in radioimmunoprecipitation assay buffer (Runde Biologicals Ltd., Yichun, China) supplemented with 1 mM phenylmethylsulfonyl fluoride. Nuclear and cytoplasmic proteins were separated using a nuclear and cytoplasmic protein extraction kit (#P0027; Beyotime Biotechnology, Shanghai, China). Proteins were loaded onto 10% sodium dodecyl sulfate polyacrylamide gels and blotted onto polyvinylidene fluoride membranes, which were blocked with 5% bovine serum albumin for 1 h and then incubated with the following corresponding primary and horseradish peroxidase (HRP)-conjugated secondary antibodies: anti-K17 (1:1000; ab53707; Abcam, Cambridge, UK), anti-lamin A/C (1:1000; Proteintech, Phoenixville, PA, USA), anti-CCL20 (1:100; ab9828; Abcam), anti-STAT3 (1:1000; #124H6; Cell Signaling Technology) and anti-β-actin (1:5000; CoWin Biosciences, Cambridge, MA, USA). Specific bands were detected using an enhanced chemiluminescence substrate (Thermo Fisher Scientific, Waltham, MA, USA).
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10

Immunocytochemical Analysis of Cellular Phenotypes

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Cells grown on 13 mm coverslips were fixed in 4% paraformaldehyde for 10 minutes and then washed with 1× phosphate buffered saline (PBS). Glycine (100 mM) was added to quench any remaining fixative. Cells were then permeabilized in 0.1% Triton-X100 (T8787, Sigma UK) in 1× PBS for 30 minutes and washed twice in PBS-0.2% Tween 20 (P1379, Sigma UK) and once further in 1× PBS. Cells were then either stained with H&E to assess cellular morphology or using immunocytochemical techniques for epithelial and mesenchymal markers. Primary antibodies were incubated at 4oC overnight (rabbit anti-human cytokeratin 17 Abcam Ab53707, Rabbit anti-human vimentin Abcam Ab92547), followed by fluorophore-conjugated secondary antibody (goat anti-rabbit TRITC conjugated Sigma T6778) at 1:100 dilution in 5% bovine serum albumin PBS-0.2% Tween 20 incubated for 90 minutes in the dark. Negative controls were performed with secondary only antibodies and matched IgG isotype negative controls to identify if there were nonspecific binding or background autofluorescence. Coverslips were mounted on slides with DAPI Vectashield (H1200, Vector Labs, Burlingame, California, USA), and images were captured with a Leica LSM 510 confocal microscope.
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