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12 protocols using srx 101a developer

1

VEGFR-2 Immunoprecipitation and Western Blot Analysis

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Cells were lysed in RIPA buffer (50 mM Tris-HCl (pH 7.4), 1% Nonidet P-40, 0.25% sodium deoxycholote, 150 mM NaCl, 1 mM EDTA, 1 mM NaF, and proteinase inhibitor cocktail). A total of 200 μg of cell lysate and 10 μl rabbit monoclonal anti-VEGFR-2 antibody (no.2749, Cell Signaling Technology; 1:100 dilution) were incubated in a shaker at 4 °C overnight. After 2 h of incubation with 25 μl of protein A/G ultraLink Resin (Thermo Scientific) at 4 °C, the beads were washed three times with PBS then boiled in SDS-PAGE sample buffer for 5 min to elute proteins for subsequent Western blotting for VEGF R2. For Western blotting, the proteins from placental tissue or first trimester HTR8 trophoblast cell lysates were separated on 12% SDS–polyacrylamide gels and blotted onto PVDF membranes and probed with anti-mouse antibodies for VEGF A, VEGF C, Dll4 (Abcam), Hey 2 and β-actin (Biovision). We used ECL chemiluminescence (Amersham Biosciences) to visualize the bands and recorded them using Konica SRX 101 A developer.
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2

Protein Extraction and Analysis

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Cancer cells were seeded and cultured until the cells reached 90% confluency. Ice-cold RIPA buffer supplemented with protease and phosphatase inhibitors was used to harvest cell lysates. BCA assay (Thermo Fisher) was performed to determine protein concentration. Proteins were separated using SDS-PAGE and transferred to PVDF membrane (Millipore). Primary antibody incubation was performed at 4 °C for an overnight and secondary antibody was performed at room temperature for an hour. Protein bands were detected using chemiluminescent substrates (Thermo Fisher) on autoradiography films with SRX-101A developer (Konica Minolta).
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3

Western Blot Analysis Using NuPage Novex Gel System

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The NuPage Novex gel system was used for electrophoresis as described in the manufacturer’s protocol (Life Technology, Paisley, UK). Protein samples were resolved on 4%–12% Bis-Tris gels to identify a band size of 66 kD. Proteins were then transferred to a polyvinylidene fluoride (PDVF) membrane purchased from Millipore U.K. Ltd. (Watford, UK), blocked in 5% (w/v) dry milk powder in standard Tris-buffer saline supplemented with 0.1% (v/v) Tween [as recommended by Cell Signalling Technology Inc. (Danvers, MA, USA)] for 4 h. Membranes were incubated at 4°C overnight in primary antibody (1:200 dilutions in 2% (w/v) BSA in TBS-T) then washed twice for 4 min in TBS-T and incubated in the appropriate HRP-conjugated secondary antibody (1:10,000 dilution in 5% (w/v) Marvel in TBS-T) for a minimum of 30 min at room temperature. Membranes were washed four times for 3 min with TBS-T and then incubated in enhanced chemiluminescence (ECL) solution (GE Healthcare Life Sciences, Buckinghamshire, UK) for 1 min. Konica Medical Film was used to visualise the signal, and the exposed films were developed using a Konica Minolta SRX-101A developer.
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4

Western Blot Analysis of Protein Samples

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Protein from whole cell lysates was run on 4-12% Tris-Bis acrylamide gels (NP0321, Thermo Fisher Scientific) using the NuPAGE system (Invitrogen). Protein was transferred to PVDF blotting membranes (1620177, Bio-Rad) using wet electroblot apparatus. Blots were blocked with 5% non-fat milk in TBST. Primary and secondary antibodies (Table S2) were applied to the blots in 5% non-fat milk in TBST. Three 5 min TBST washes were performed after each antibody incubation. Following the last wash, SuperSignal West Pico Chemiluminescent substrate (34080, Thermo Fisher Scientific) was applied to the blots for 3 min. The blots were then exposed to films (F-9023, GeneMate, VWR, Radnor, PA), which were developed in a SRX-101A developer (Konica Minolta, Ramsey, NJ). After probing with anti-GATA4 antibodies, blots were stripped using One Minute Western Blot Stripping Buffer (GM Bioscience, Rockville MD) and subsequently re-probed with anti-GATA6 and anti-TBP antibodies (Fig. 1F).
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5

Trm10 Overexpression and 5-FU Sensitivity

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A previously described trm10Δ strain of S. cerevisiae (Jackman et al. 2003 (link)) was transformed with 2µ (high copy) LEU2 plasmids expressing the indicated Trm10 genes (ScTrm10, hTRMT10A, hTRMT10B, or empty vector) under the control of a galactose-inducible promoter (Swinehart et al. 2013 (link)). Cultures of Leu+ transformants were standardized to OD600 = 1, and tested for 5-fluorouracil (5-FU) sensitivity by spotting 2 µL of fivefold serial dilutions onto S-Gal-leu plates containing varied concentrations of 5-FU (0, 0.1, 1 µg/mL). Plates were grown at 30 or 37°C for 2–3 d before being photographed. Western blots were performed on crude lysates prepared as described in Gelperin et al. (2005) (link), and used anti-HA primary antibodies (Abcam, ab18181) and anti-mouse secondary antibodies (Sigma, A9044) to probe for expression of enzymes with amino-terminal HA epitopes. Antibodies were detected using Amersham ECL Western Blotting Detection Reagent (GE Healthcare), and imaging was performed with the Konica SRX-101A developer (Tokyo, Japan).
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6

Western Blot Analysis of Cellular Proteins

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Proteins from cells or tumor tissues were extracted in RIPA lysis buffer (Pierce) supplemented with protease and phosphatase inhibitor cocktail (Cell Signaling). Protein concentration was determined using the BCA assay (Pierce). Lysates were then denatured and samples containing 30 μg proteins were subjected to electrophoresis in 10% SDS-poly-acrylamide gel, followed by transfer to polyvinylidene difluoride membranes (Bio-Rad). After blocking with 5% nonfat dry milk, the membrane was exposed to the primary antibody and incubated at 4 °C overnight. Blots were visualized by labeling with HRP-coupled secondary antibodies (Sigma-Aldrich) and incubation with Amersham ECL western blotting detection reagent (Catalog # RPN2106). Blots were developed on a Konica SRX101A developer and quantified with ImageJ.
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7

Western Blot Analysis of Glycolytic Proteins

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WRO and WRO-LvR cells (70–80% confluency) were treated with 2 μM KU757 for 48 h. Cells were lysed with lysis buffer and their proteins extracted as previously described (17 (link)). Protein concentrations of cells and exosomes were determined using BCA and Micro BCA protein quantification assay kits (ThermoFischer Scientific manufacturer’s protocol). Equal amounts of protein were electrophoresed, transferred to a nitrocellulose membrane (BioRad), blocked in 5% milk, and probed with the appropriate primary antibodies for glycolysis and GAPDH (Cell Signaling Technology). Membranes were incubated with an appropriate secondary antibody (Cell Signaling Technology), treated with SuperSignal West Pico PLUS (ThermoFisher), visualized by enhanced chemiluminescence, and captured on autoradiography film (Molecular Technologies) on a Konica Minolta SRX 101A developer. ImageJ software (NIH) was used to determine the relative density of protein bands.
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8

Western Blot Analysis of Apoptosis Markers

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Whole cell lysates were subjected to SDS-PAGE and transferred to 0.2μm nitrocellulose membranes. Membranes were blocked in 5% milk in PBS-T and left to incubate with primary antibody overnight at 4C. The following day, membranes were incubated with secondary antibody conjugated to HRP and development was carried out using the WesternBright Sirius Kit (Advansta) and visualized with a SRX-101A developer (Konica Minolta, Wayne, NJ) or a c-Digit digital scanner (LI-COR, Lincoln, Nebraska). Loading was assessed either by actin, tubulin, or Ponceau S. The following antibodies were used: cleaved caspase-3 and PARP/cleaved PARP (Cell Signaling), Bcl-2, DNMT1, and actin (Santa Cruz Biotechnology), tubulin (Thermo Scientific).
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9

In Vitro Kinase Assay of LATS1

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Active, recombinant human LATS1 kinase domain (orthologous to Drosophila Warts), purified from Sf9 insect cells, was purchased from SignalChem. Purified MudCC constructs (50 µg) and LATS1 (1 µg) were diluted in ice-cold assay buffer (20mM Tris, pH 7.4, 100mM NaCl, 1mM DTT, 10mM MgCl2, and 10 µM ATP). To initiate reaction, [γ-32P]ATP (5 µCi) was added to each reaction and incubated at 30 °C for 30 minutes. Reactions were quenched by addition of SDS loading buffer. Samples were resolved by SDS-PAGE and dried gels were analyzed using Kodak BioMax MS film in a Konica SRX-101A developer.
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10

Isolation and Western Blot Analysis of Murine Neutrophils

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PMN were isolated from mice spleen as described above and lysed in RIPA lysis buffer (Thermofisher) supplemented with Protease and Phosphatase Inhibitors (Thermofisher). After PMN were resuspended in RIPA buffer, the solution was vortexed, and protein were sonicated to achieve complete lysis. Protein were quantified with Bradford protein assay (Bio-RaD) with BSA (Millipore Sigma) standard. 40 ug of protein were loaded on a 10% NuPage gel (Thermofisher) and run in MOPS buffer (Thermofisher). Protein were then transferred with wet system (Bio-Rad) on a PVDF membrane (Millipore-Sigma) and blocked in 5% milk solution 2h RT. Primary antibodies listed below were incubated ON in 5%BSA-TBS-T1x solution and anti-rabbit secondary antibody HRP conjugated (Cell signaling) was incubated 2h RT at 1:1000 dilution in 5% milk. Clarity Max Western ECL solution (Bio-Rad) was used as substrate and film (Amersham) were developed with Konica SRX-101A developer.
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