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16 protocols using ascend 600 spectrometer

1

Spectroscopic Characterization of Organic Compounds

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Melting points are uncorrected. NMR spectra were recorded using a Bruker Ascend 600 spectrometer (Bruker, Billerica, MA, USA). To assign the structures, the following 2D experiments were employed: 1H-13C gradient selected HSQC and HMBC sequences. Standard experimental conditions and standard Bruker programs were used. The 1H- and 13C-NMR spectral data are given relative to the TMS signal at 0.0 ppm. HR mass spectra were recorded with Bruker Impact II (Bruker, Billerica, MA, USA). Solid-state infrared spectra were recorded in the range of 4000–1000 cm−1 using the Shimadzu IRAffinity-1 FTIR spectrometer (Shimadzu, Kyoto, Japan) and KBr pellet method. CHNS elemental analysis was performed using EuroVector 3018 analyser (EuroVector, Pavia, Italy). Total halides were determined using titration (after mineralization) with mercuric nitrate solution.
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2

Purity Determination and Structural Identification of HSCCC Fractions

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The purity of each peak fraction obtained by HSCCC was determined by NMR using internal standard method. The internal standard solution was prepared by dissolving a certain amount of hydroquinone with deuterated methanol (MeOD) giving a concentration of 0.02 mol/L. The fraction of about 1 mg was accurately weighed and dissolved in the hydroquinone internal standard solution. NMR spectra was recorded, the peak area ratio between the selected proton peak of the hydroquinone and that of the fraction was measured to calculate the purity of the fraction. Structural identification of each peak fraction was carried out by analyzing their MS and nuclear magnetic resonance (NMR) spectra. High resolution electrospray ionization MS (HR-ESI-MS) analyses were recorded with Agilent 6540 Q-TOF MS (Santa Clara, CA, USA). NMR spectra were recorded on Bruker Ascend 600 spectrometer equipped with cryogenic probe (Karlsruhe, Germany).
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3

NMR Characterization of Chemical Compounds

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For NMR analysis, a Bruker Ascend™ 600 spectrometer (Bruker, Rheinstetten, Germany) with a 5 mm probe was used. The probe temperature was maintained at 298 K and standard 5 mm NMR tubes were used. 1H NMR and 13C NMR spectra were acquired from 0.5 mL of CDCl3-reconstituted sample in Section 2.2, and the chemical shifts (δC: 77.0, δH: 7.26) were the residual solvent peaks. Coupling constants (J) were measured in hertz (Hz) and chemical shifts (δ) were recorded in parts per million (ppm), respectively. The data were processed with MestReNova (version 14) software.
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4

Spectroscopic characterization of natural products

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The 1D and 2D NMR spectra were recorded using an ASCEND 600 spectrometer (Bruker BioSpin Gmbh, Rheinstetten, Germany) at 298 K. All chemical shifts are reported in ppm from tetramethylsilane, using solvent resonances resulting from incomplete deuteration as the internal reference. The HR-ESIMS data were obtained using a TripleTOF 5600+ system (SCIEX, Framingham, MA, USA). Specific optical rotations were measured using an Autopol III S2 Polarimeter (Rudolph Research Analytical, Hackettstown, NJ, USA). IR spectra were recorded using an FT/IR-4100 spectrometer (JASCO Inc., Easton, MD, USA), while the UV–visible spectra were measured using a Shimadzu UV-1650PC spectrophotometer. Semi-preparative HPLC was performed using a WatersTM 1525 binary pump and a UV/Visible 2489 detector (Tepnel Pharma Services Limited, Livingston, Scotland). HPLC was performed using a YMC-Pack Pro C-18 column (250 × 10 mm l.D., S-5 µm, 12 nm). Silica gel (0.04–0.063 mm particle size, Merck) and RP-18 (0.04–0.063 mm particle size, Merck) were used for carrying out flash column chromatography. Thin layer chromatography (TLC) was performed using Merck Silica gel 60 F254 and RP-18 F254 plates. All reagents were purchased from Sigma-Aldrich (Merck KGaA, Darmstadt, Germany).
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5

Structural Characterization of Compounds

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Melting points are uncorrected. NMR spectra were recorded using a Bruker Ascend 600 spectrometer (Bruker, Billerica, MS, USA). To assign the structures, the following 2D experiments were employed: 1H-13C gradient selected HSQC (Heteronuclear Single Quantum Coherence) and HMBC (Heteronuclear Multiple Bond Coherence) sequences. Standard experimental conditions and standard Bruker program were used. The 1H- and 13C-NMR spectral data are given relative to the TMS signal at 0.0 ppm. EI MS spectra were recorded using an LKB GC MS 20091 spectrometer at 75 eV (LKB, Bromma, Sweden).
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6

Enzymatic Synthesis of Nucleotide Analogues

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The nucleotides (dGTP and dATP disodium salts) were purchased from Solarbio Science & Technology Co., Ltd. (Beijing, China). AMP was purchased from Sinopharm Chemical Reagents Co., Ltd. (Shanghai, China). Dimethylformamide (DMF) and Dowex-50W ion exchange resin were purchased from Acros Organics. Carbonyldiimidazole (CDI) was purchased from Sigma Aldrich. Klenow fragment DNA polymerase exo was purchased from New England Biolabs (Beijing, China). ATP determination kit (Kinase Glo) was purchased from Promega (Beijing, China). Streptavidin-labeled magnetic beads was purchased from PuriMag Biotech (Xiamen, China). The oligonucleotides were synthesized by Sangon Biotech Co., Ltd. (Shanghai, China) and purified by HPLC. The DNA sequences are listed in Table S2. The luminescence signal was measured by the multimode reader (BioTek, USA). NMR spectra including 1H NMR, and 31P NMR were recorded on a Bruker Ascend-600 spectrometer.
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7

NMR Analysis of Organic Compounds

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Melting points are uncorrected. NMR spectra were recorded using a Bruker Ascend 600 spectrometer (Bruker, Billerica, MA, USA). The following 2D experiments were employed to assign the structures: 1H-13C gradient selected HSQC and HMBC sequences. Standard experimental conditions and standard Bruker programs were used. The 1H-NMR and 13C-NMR spectral data are provided relative to the TMS signal at 0.0 ppm. HR mass spectra were recorded with the Bruker Impact II (Bruker, Billerica, MA, USA).
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8

Characterization of Organic Compounds

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Melting
point was obtained on a BA-350 (BenAng) melting point apparatus. Optical
rotations were measured on a Rudolph Research Autopol I automatic
polarimeter. UV and ECD spectra were recorded on a JASCO High Performance
J-1500 CD spectrometer. NMR spectra were obtained at 600 MHz for 1H NMR and 150 MHz for 13C NMR, respectively, using
a Bruker Ascend 600 spectrometer. HRESIMS data were acquired on an
Agilent Technologies 6230 Accurate Mass Q-TOF UHPLC/MS spectrometer.
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9

NMR Analysis of ARG and SMV Complex

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The ARG system (S7/7.34 mol·dm−3) and its counterpart that is the ARG saturated with SMV along with deuterated methanol-solubilized SMV were subjected to the NMR spectroscopic analysis. NMR experiments were performed on a Bruker Ascend™ 600 spectrometer at a proton resonance 1H of 600 MHz, equipped with a Z-gradient 5 mm broadband observe probe using standard pulse sequences and pulse cycling. Each sample was calibrated at 90° high-power pulse for 1H. The sample temperature was set at 300 K. A 2D NOESY spectrum was recorded with 440 increments (64 scans each) in t1 time domain and 2,000 complex points in t2 time domain using a spectral width of 8,500 Hz in both dimensions with the 1H carrier on water. The NMR spectrum of SMV was recorded using deuterated methanol as solvent, whereas SMV–ARG complex was recorded in deuterated water.
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10

Characterization of Organic Compounds

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NMR spectra data were recorded on a Bruker ascend 600 spectrometer (Bruker, Karlsruhe, Germany) with TMS used as a reference. Optical rotations were measured on PerkinElmer Model 341 polarimeter (PerkinElmer, Waltham, MA, USA). UV spectrum data were acquired using HACH DR6000 UV-visible spectrophotometer (Hach, Loveland, CO, USA). IR spectra were recorded as KBr disks on PerkinElmer Spectrum 100 Series FT-IR spectrometers (PerkinElmer, Waltham, MA, USA). HRESIMS data were obtained on a LTQ Orbitrap XL™ Hybrid Ion Trap-Orbitrap FT-MS spectrometer (Thermo, Waltham, MA, USA). TLC was carried out on silica gel GF254 plates (Yantai Institute of Chemical industry, Yantai, China) and spots were visualized by UV light (254 and/or 365 nm) and spraying with 10% H2SO4 followed by heating. Column chromatography was carried out using silica gel (Qingdao Haiyang Chemical Co., Ltd., Qingdao, China), MCI gel (CHP-20P, 75–150 μm, Mitsubishi Chemical Corporation, Tokyo, Japan), ODS (35–70 μm, Grace, Maryland, MD, USA), and Sephadex LH-20 (GE Healthcare Bio-Science AB, Uppsala, Sweden) as packing materials. Semi-preparative HPLC was performed on a Shimadzu instrument (Shimadzu, Tokyo, Japan) coupled to CBM-20A system controller, LC-20AP pump, SPD-M20A Photodiode Array Detector and SIL-10AP autosampler and equipped with a Shimadzu PRC-ODS column (250 mm × 20 mm i.d., 15 μm).
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