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8 protocols using cd3e clone 145 2c11

1

Ovalbumin-specific B cell analysis

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Draining lymph nodes (dLN; inguinal) were harvested 7 days after each immunization. Cells were stained with W614A-3S coupled with biotinylated ovalbumin (Ova) protein (Covalab) for 30 min at room temperature before cell surface antigen staining with a standard method after receptor Fc blocking with CD16/CD32 (clone 2.4G2; BD Biosciences, San Jose, CA, USA), and the following anti-mouse Abs: CD3e (clone 145-2C11; eBioscience, San Diego, CA, USA), CD45R/B220 (clone RA3-6B2), CD19 (clone 1D3), IgG1 (clone A85-1), IgD (clone 11-26c.2a), T- and B-cell activation antigen (clone GL7), and streptavidin (BD Biosciences). For cell analysis, dead cells were excluded by using the LIVE/DEAD fixable kit (Molecular Probes, Eugene, OR, USA). Cells were analyzed by BD LSRFortessa flow cytometry or isolated by BD FACSAria II sorter. A pool of five mice per condition at W3 and W5 was used for W614A-3S-specific B cell isolations (BioMark Dynamic array). A pool of 25 mice per condition at W11 was used for W614A-3S-specific IgG1+ GC (GL7+IgDLow) and NGC (GL7-IgD+) B cell isolations [chromium single cell V(D)J assay].
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2

Comprehensive Immune Cell Phenotyping

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Cell suspensions were stained in ice cold PBS with or without 2 % FBS on ice. The following antibodies were used for staining mouse cells: CD45 (clone 30-F11, Biolegend), Ly6G (clone 1A8, BD Biosciences), CD11c (clone HL3, BD Biosciences), CD11b (clone M1/70, Biolegend), Siglec F (clone E50–2440, BD Biosciences), CD3e (clone 145–2C11, eBioscience), CD4 (clone GK1.5, Biolegend), IFN © (clone XMG1.2, Biolegend), IL-17 (clone eBio17B7, eBioscience), IL-5 (clone TRFK5, Biolegend), IL-13 (clone eBio13A, eBioscience), CD25 (clone PC61.5, eBioscience), CD44, CD62L (clone MEL-14, BD Biosciences), MHC class II I-A/I-E (clone M5/114.15.2, eBioscience), DC-SIGN/CD209 (R&D systems), CD32 (clone D34–485, eBioscience), TLR4/CD284 (clone SA15–21, Biolegend), Annexin V (Biolegend). Neutrophils were defined as CD45+CD11b+Ly6G+DNA+ and cytoplasts were defined at CD45+CD11b+Ly6G+DNA. Naïve T lymphocytes were defined as CD4+CD25CD44lowCD62Lhi. Lung Dendritic cells were defined as CD45+CD11c+ MHCII+autofluorescencelow. The following antibodies were used to stain human cells: anti-CD45 PE-Cy7 (HI30), anti-CD66b (G10F5), anti-CD16 APC-Cy7 (3G8) all from Biolegend. Vybrant DyeCycle Ruby (Life Technologies) was used to stain intracellular DNA. Data were acquired on BD Canto II or BD LSR Fortessa and analyzed using FlowJo v10. For cell sorting, FACS Aria was used.
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3

Isolation and Identification of Murine Hematopoietic Stem Cells

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Bone marrow cells were isolated from the femurs and tibiae of mice by crushing the bone in FACs buffer (2% FBS in 1× PBS) before filtering through a 40-mm cell strainer. The early progenitor cells (c-Kit+) were enriched by a 30-min incubation with CD117 (c-Kit) microbeads (Miltenyi Biotec) before being stained for 1 h at 4°C with the following antibodies: PerCP-cyanine5.5-conjugated lineage cocktail with antibodies anti-CD4 (clone RM4-5; eBioscience), CD3e (clone 145-2C11; eBioscience), Ly-6G/Gr-1 (RB6-8C5; eBioscience), CD11b/Mac-1 (clone M1/70; eBioscience), CD45R/B220 (RA3-6B2; eBioscience), CD8a (clone 53-6.7; eBioscience), TER-119 (eBioscience), anti-c-Kit (APC, clone 2B8; eBioscience), anti-Sca-1 (BV421, clone D7; Biolegend), anti-CD150 (SLAM; PE, clone TC15-12F12.2 biolegend), anti-CD34 (FITC, clone RAM34; eBioscience), and anti- CD16/32 (AF700, clone 93; eBioscience) (Frascoli et al. 2012 (link)). Samples were run on a LSRII flow cytometer (BD Pharmingen), and the data were analyzed with FlowJo software.
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4

Isolation and Characterization of Murine Hematopoietic Stem Cells

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Bone marrow cells were isolated from femurs, tibiae and iliac crests with PBS supplemented with 2% FCS and strained through 70 μm meshes. Red cells were lysed by resuspending the cells in 10 mL red cell lysis buffer (130-094-183, MACS Miltenyi Biotec) for 10 min at room temperature. After centrifugation, the cell pellet was resuspended in PBS supplemented with 2% FCS and nucleated cells were counted with 3% acetic acid on a Vi-Cell XR cell viability counter (Beckman Coulter). 10 × 106 bone marrow cells were resuspended in 200 μL of PBS supplemented with 2% FCS containing the following antibody solution: FITC-conjugated lineage cocktail with antibodies against CD4 (clone H129.19, BD PharMingen), CD3e (clone 145-2C11, eBioscience), Ly-6G/Gr-1 (clone RB6-8C5, eBioscience), CD11b/Mac-1 (clone M1/70, BD PharMingen), CD45R/ B220 (clone RA3-6B2, BD PharMingen), FcεR1α (clone MAR-1, eBioscience), CD8a (clone 53-6.7, BD PharMingen), CD11c (clone N418, eBioscience), TER-119 (clone Ter119, BD PharMingen); c-Kit (PerCP-Cy5.5, clone 2B8, eBioscience), Sca-1 (PE-Cy7, clone D7, eBioscience), Flt3 (PE, clone A2F10, eBioscience), CD34 (eFluor660, clone RAM34, eBioscience), CD16/32 (BV421, clone 93, BioLegend) and Il-7R⍺ (BV605, clone A7R34, BioLegend).
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5

Isolation and Characterization of Immune Cells

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For single-cell suspensions, white blood cells were obtained from blood after lysis of red blood cells with NH4Cl. Lung white blood cells were obtained from density gradient centrifuged lung cell suspensions (Percoll 40% and 72%, GE Healthcare). Lymph node cells were extracted from both inguinal lymph nodes. For cytospin preparations, single-cell suspensions were spun on a glass slide and stained with H&E. For flow cytometry, cell suspensions were incubated with anti-CD16/anti-CD32 (Miltenyi Biotec) and stained with the following monoclonal antibodies: CD3e (clone 145-2C11), CD8a (53-6.7), CD25 (PC61.5), CD49b (DX5), CD69 (H1.2F3), CD122 (5H4) (eBioscience, BD Biosciences or BioLegend). Dead cells were excluded using propidium iodide (PI) or Zombie Aqua Fixable Viability Dye (BioLegend). Samples were run with a FACSCalibur using CELLQuest software or an LSR Fortessa X-20 using FACSDiva software (all BD Biosciences). Live singlet cells (PI- or ZombieAqua-) were analyzed with FlowJo (Version 10).
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6

Profiling T Cell Subsets in ApoE-/- Mice

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Splenocytes were collected from 25-week-old ApoE–/– mice euthanized after 16 weeks of high-cholesterol diet feeding consisting of 0.15% cholesterol and 21% fat (TD.88137, Envigo). RBC-lysed splenocytes were incubated with 20 μg/mL P210-PAM in complete RPMI 1640 medium for 48 hours, then stained with CD3e (clone 145-2C11, eBioscience), CD4 (clone GK1.5, BD Bioscience), CD8b (clone H35-17.2, eBioscience), CD44 (clone IM7, eBioscience), and CD62L (clone MEL-I4, eBioscience) antibodies for T effector/memory cell profiling using flow cytometry.
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7

Multiparameter flow cytometric analysis of immune cells

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Single cell suspensions were incubated with 100 µL diluted antibodies for 30 min at 4°C in ice-cold fluorescence-activated cell sorting (FACS) buffer (0.5% bovine serum albumin, 2 mM EDTA in PBS) with ‘cocktails’ of the following antibodies: CD45 clone 30-F11, CD3e clone 145–2 C11, CD4 clone RM4-5, CD62L clone MEL-14, CD44 clone IM7, CD8a clone 53–6.7, B220 clone RA3-6B2, CD23 clone B3B4, CD19 clone 1D3 and CD5 clone 53–7.3 (all from eBiosciences), CD21 clone 7G6 (BD biosciences) and CD11c clone N418, F4/80 clone BM8, CD64 clone X54-5/7.1 and NK1.1 clone PK136. Intracellular staining for Ki67 clone B56 (BD Biosciences) and pS6 PE and pAKT Alexa Fluor 488 (Cell signalling) was performed by using the Cytofix/Perm kit (BD biosciences) and Fixation/Permeabilization Buffer set (ebiosciences) according to the manufacturer’s protocol. Cells were resuspended in FACS buffer and then analysed using a Cyan-ADP (Dako) or Fortessa (BD) with forward/side scatter gates set to exclude non-viable cells. Cells of interest were sorted by using BD FACSAria. Data were analysed with FlowJo software (Tree Star).
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8

Regulation of Regulatory T Cells by IL-38

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Male BALB/c mice aged 6‐8 weeks old were purchased from the Laboratory Animal Center of the Chinese Academy of Medical Sciences (SCXK‐jing‐2014‐0004), Beijing, China. The mice were housed in cages in a temperature‐controlled room under a 12‐hour light/dark cycle for at least 7 days before experiments.
Recombinant murine IL‐38 and anti–IL‐38 antibody were obtained from R&D Systems, Minneapolis, MN. CD4+CD25+ T cell isolation kit was purchased from MiltenyiBiotec. LPS was purchased from Sigma‐Aldrich, St. Louis, MO. Carboxyfluoresceinsuccinimidyl ester (CFSE) cell proliferation kit was obtained from Invitrogen. Enzyme‐linked immunosorbent assay (ELISA) kits for mouse IL‐10, TGF‐β1, IL‐2, IL‐4 and interferon (IFN)‐γ were obtained from ExCell Biology. Antimouse antibodies against Foxp3 [FJK‐16s, conjugated to phycoerythrin (PE)‐cyanine7], CD152 (CTLA‐4) [UC10‐4B9, conjugated to allophycocyanin (APC)], CD4 [RM4‐5, conjugated to fluorescein isothiocyanate (FITC)], CD25 (PC61.5, conjugated to PE), CD3e (clone 145‐2C11) or CD28 (clone 37.51) were obtained from eBioscience. Anti‐CD25 antibody (purified antimouse CD25 antibody, clone PC61) and rat IgG1 were purchased from Biolegend.
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