The largest database of trusted experimental protocols

Flexitube sirna mm pard3 4

Manufactured by Qiagen
Sourced in Chile, Germany

The FlexiTube siRNA Mm_Pard3_4 is a laboratory reagent designed for gene expression research. It is a small interfering RNA (siRNA) molecule that targets the Pard3 gene in the mouse species. The product is intended for use in in vitro experiments to study the function and regulation of the Pard3 gene.

Automatically generated - may contain errors

2 protocols using flexitube sirna mm pard3 4

1

Syndecan-4 and Tiam1 Regulation in Cell Adhesion

Check if the same lab product or an alternative is used in the 5 most similar protocols
Retroviral expression vector (pBabe-puro) encoding Syndecan-4 fused to an extracellular HA-tag was kindly provided by Dr. Mark Morgan (University of Liverpool, UK) [36 ]. Syndecan-4-HA fragment was subcloned into EcoRI/XhoI sites of pcDNA3.1(+) plasmid. For the live cell experiments we used mCherry-vinculin (modified pEGFP-C1-mCherry plasmid harboring a deletion of the GFP gene sequence), kindly provided by Dr. Vicente Torres (Universidad de Chile, Chile) [37 ]. pEGFP-C1-Tiam1-PHnCCEx containing a mutation in the RhoK phosphorylation site encoding for a dominant negative mutant of Tiam1 was kindly provided by Dr. María Paz Marzolo (P. Universidad Católica de Chile, Chile) [38 ].
To downregulate PAR-3 expression we used siRNA ON-TARGET plus SMART pool (Thermo Scientific) against rat PAR-3 or FlexiTube siRNA Mm_Pard3_4 (Qiagen) targeting mouse PAR-3. A mix of two Tiam1 siRNA targeting the human Tiam1 with 88% homology with the rat Tiam1 sequence (Dharmacon) was used to lower Tiam1 expression. Silencer® Negative Control No. 1 (Ambion™) or AllStars (Qiagen) were used as siRNA negative control. Plasmids and siRNAs transfections of DI TNC1 cells were performed with Amaxa Nucleofector following manufacturer’s recommendations for astrocytes (Amaxa Biosystems, Lonza). Lipofectamine RNAiMAX Reagent and Lipofectamine 3000 (Thermo Fisher Scientific) were used to transfect MEFs.
+ Open protocol
+ Expand
2

Electroporation of B-lymphoma and Primary B-cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
We electroporated 2.5 × 106 IIA1.6 B-lymphoma cells using Nucleofector R T16 (Lonza, Gaithersburg, MD) in the presence of 4 μg of plasmid DNA. Par3-GFP–transfected cells were cultured for 12–24 h before functional analysis. Transfection with shPar3 or shControl plasmids was done as previously described (Yuseff et al., 2011 (link)). B-cells infected with shPar3 or shControl lentiviruses were selected in puromycin and transfected after 96 h with cathepsin D–monomeric RFP (mRFP), centrin-GFP, LifeAct-CherryFP, or dynein-IC-RFP and analyzed within 24 h.
We electroporated 4 × 106 CpG-treated primary B-cells using Mouse B Cell Nucleofector Kit (Lonza) in the presence of 100 nM of AllStars Negative Control siRNA (1027280; Quiagen, Hilden, Germany) for siControl or FlexiTube siRNA Mm_Pard3_4 and Mm_Pard3_2 (SI01369508 and SI01369494; Qiagen) for siPar3-A and siPar3-B, respectively. B-cells were resuspended in CpG-­free prewarmed medium, and presentation experiments were performed 48 to 72 h after RNA interference transfection. Par3 levels were analyzed by Western blot as described later.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!