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4 protocols using collagen 1α1

1

Immunofluorescence Analysis of ECM Proteins

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After being deparaffinized at 65°C for 2 h, the slides were cooled for 1 h at room temperature. After that, the slides were blocked with 10% goat serum at room temperature for 50 min, and then incubated with primary antibodies: collagen 1α1 (Cell Signaling Technology, 1:200), fibronectin (Abcam, 1:500) and α-SMA (Abcam, 1:200) overnight at 4°C. Later on, the slides were incubated with corresponding secondary antibodies for 20 min. A fluorescence microscope was used to observed histological images. Image-ProPlus software used to quantitatively analyze the expression of each protein.
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2

Liver Protein Expression Analysis

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Liver samples were processed, and Western blot performed as described [25 (link)]. The primary antibodies used were 3-Nitrotyrosine (N5538, Sigma Aldrich, San Luis, MO, USA), cleaved caspase-3 (9661, Cell Signalling, Danvers, MA, USA), alpha smooth muscle actin (α-SMA) (A2547, Sigma Aldrich, San Luis, MO, USA), collagen 1α1 (84336, Cell Signalling, Danvers, MA, USA), cellular retinol binding protein (CRBP1) (sc-271208, Santa Cruz), phosphorylated moesin at Thr558 (sc-12895, Santa Cruz, CA, USA), total moesin (sc-13122, Santa Cruz, CA, USA), phosphorylated endothelial nitric oxide synthase (eNOS) at Ser1177 (9571, Cell Signaling, Danvers, MA, USA), and total eNOS (610297, BD Transduction Laboratories, San Jose, CA, USA), all 1:200. Blots were revealed by chemiluminescence and protein expression was determined by densitometric analysis using the Image Studio Lite (LI-COR, Lincoln, USA). Blots were also assayed for α-tubulin (1:1000, Sigma-Aldrich, San Luis, MO, USA) content as standardization of sample loading.
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3

Western Blot Quantification of Proteins

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Total proteins were quantified using the BCA assay kit (Beyotime), and equal amounts of protein (30 μg) were separated by 10% SDS-PAGE. After that, proteins were transferred onto the polyvinylidene fluoride (PVDF) membrane (Millipore, Billerica, MA, USA). After blocking with 5% skim milk in tris-buffered saline with tween-20 (TBST) for 1 h, the membranes were incubated with primary antibodies: collagen 1α1 (1:1000, Cell Signaling Technology), fibronectin (1:1000, Abcam), alpha-smooth muscle actin (α-SMA; 1:1000, Abcam), TSC1 (1:1000, Abcam), phosphorylated-mTOR complex 1 (p-mTORC1; 1:1000, Cell Signaling Technology), mTORC1 (1:1000, Cell Signaling Technology), phosphorylated-p70 ribosomal s6 kinase (p-p70S6K; 1:1000, Cell Signaling Technology), p70S6K (1:1000, Cell Signaling Technology), phosphorylated-eukaryotic translation initiation factor 4E-binding protein 1 (p-4E-BP1; 1:1000, Cell Signaling Technology), 4E-BP1 (1:1000, Cell Signaling Technology), β-actin (1:1000, Abcam) at 4°C overnight. Later on, the membranes were incubated with the horseradish peroxidase-conjugated secondary antibody for 1 h, and then the protein bands were visualized using the enhanced chemiluminescence (ECL) reagents (Thermo Fisher Scientific).
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4

Protein Expression Analysis in Quadriceps and Diaphragm

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Quadriceps and diaphragm, collected from 14-week-old male WT and mdx5cv mice, were homogenized in RIPA buffer (Pierce Biotechnology, Waltham, MA, USA) supplemented with cOmplete protease inhibitor cocktail (Roche Diagnostic). After centrifugation (10,000 ×g for 15 minutes), the protein concentration was quantitated by Pierce BCA protein assay kit (Pierce Biotechnology). 50 μg of protein lysate were run on 4–12% Bis-Tris mini-gel (Invitrogen) under reducing condition then transferred to PVDF membranes (Immobilon). Blots were blocked with 5% (w/v) of non-fat milk in TBS-T (1× Tris-buffered saline (pH7.6) with 0.1% (v/v) Tween 20) and then incubated with primary antibodies include α/β-tubulin (1:1000 dilution), collagen 1α1 (1:500), fibronectin (1:250) (all purchased from Cell Signaling Technology, Danvers, MA, USA), and collagen III (1:500) (Abcam, Waltham, MA, USA). Signals were detected by IRDye 800 or 680 (LI-COR Biosciences, Lincoln, NE)-conjugated secondary antibodies with appropriate species specificity. Immunoblots were visualized by the Image Studio software (LI-COR Biosciences) that accompanies the LI-COR Odyssey infrared system (LI-COR Biosciences).
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