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11 protocols using linoleic acid

1

Immunolabeling of Apoptosis and Cytoskeleton

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Chicken anti-GFP (ab13970) antibody was purchased from Abcam. Rat anti-E-cadherin (131900) antibody was from Life Technologies. Alexa-Fluor-647-conjugated rabbit anti-cleaved caspase-3 (9602S) antibody was purchased from Cell Signaling Technology. Alexa-Fluor-568-conjugated phalloidin from Life Technologies was used at 1.0 U/mL. Alexa-488-conjugated secondary antibody was from Abcam, and Alexa-Fluor-568- and 647-conjugated secondary antibodies were from Life Technologies. Hoechst 33342 (Life Technologies) was used at a dilution of 1:5,000. TMRM was obtained from Molecular Probes. Palmitic acid, stearic acid, linoleic acid, α-linolenic acid, sphingomyelin, cholesterol, and Nile Red were from Wako Pure Chemicals Industries. Acetylsalicylic acid (aspirin) was from Sigma-Aldrich. Trimetazidine (Abcam) was used at 10 μM.
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2

Sulfane Sulfur Probe 4 Assay Protocol

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Sulfane sulfur probe 4 (SSP4) was a kind gift from Dr. Ming Xian at Washington State University, USA. Cell counting kit-8 (WST-8), sodium sulfide, and Diethylenetriamine-N,N,N′,N′′,N′′-pentaacetic acid (DTPA) were purchased from DOJINDO chemical laboratory, Japan. Human serum albumin and N,N-dimethyl-p-phenylenediamine (DPDA) were obtained from Sigma Aldrich, St. Louis, MO, USA. Zinc acetate, 2,2′-azobis(2-amidinopropane), dihydrochloride (AAPH), ascorbic acid, dimethyl sulfoxide (DMSO), hydrochloric acid (HCl), potassium hydroxide (KOH), iron (III), chloride 5,5-dithiobis-2-nitrobenzoic acid (DTNB), glutathione, and linoleic acid were purchased from FUJIFILM Wako Pure Chemical Corporation, Osaka, Japan. OneTouch® was purchased from LifeScan Japan, Tokyo, Japan. Salivette® was obtained from SARSTEDT, Nümbrecht, Germany. All water in assays was used deionized and distilled one. The ultraviolet plate was purchased from zell-kontakt GmbH, Nörten-Hardenberg, Germany. Hexadecyltrimethylammonium bromide (CTAB) was obtained from Tokyo Chemical Industry, Tokyo, Japan. The salivary amylase monitor and its chips were gifted by Nipro, Osaka, Japan.
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3

Immunolabeling of Apoptosis and Cytoskeleton

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Chicken anti-GFP (ab13970) antibody was purchased from Abcam. Rat anti-E-cadherin (131900) antibody was from Life Technologies. Alexa-Fluor-647-conjugated rabbit anti-cleaved caspase-3 (9602S) antibody was purchased from Cell Signaling Technology. Alexa-Fluor-568-conjugated phalloidin from Life Technologies was used at 1.0 U/mL. Alexa-488-conjugated secondary antibody was from Abcam, and Alexa-Fluor-568- and 647-conjugated secondary antibodies were from Life Technologies. Hoechst 33342 (Life Technologies) was used at a dilution of 1:5,000. TMRM was obtained from Molecular Probes. Palmitic acid, stearic acid, linoleic acid, α-linolenic acid, sphingomyelin, cholesterol, and Nile Red were from Wako Pure Chemicals Industries. Acetylsalicylic acid (aspirin) was from Sigma-Aldrich. Trimetazidine (Abcam) was used at 10 μM.
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4

Lipase Activity of C. acnes Subspecies

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C. acnes subsp. defendens ATCC11828 (single-locus sequence typing [SLST], K9, type strain), which showed elevated lipase activity, was used in all of these studies. C. acnes subsp. acnes ATCC6919 (SLST A1, type strain), which is frequently isolated from healthy skin and acne pustules, and Staphylococcus aureus JCM2874 as type strains, were used in a portion of these studies [15 (link)]. C. acnes was grown in brain heart infusion broth (Oxoid) and inoculated at approximately 105 c.f.u./ml in skin sebum medium or LNB-containing sebum components. After 72 hr of anaerobic incubation, the bacterial population and lipase activity were measured. For the sebum components, palmitic acid and linoleic acid were purchased from FUJIFILM Wako Pure Chemical, while stearic acid and palmitoleic acid were purchased from Tokyo Chemical Industries (Tokyo, Japan).
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5

Lipid Staining and ICG Uptake Assay

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For Oil Red O staining, linoleic acid (Wako) was added into the medium at 10 mg/ml and incubated for 30 minutes. After washed with PBS, cells were fixed with 4% PFA at room temperature for 30 minutes and washed with 60% isopropanol, followed by incubation for 30 minutes with Oil Red solution which Oil Red powder (Sigma Aldrich) was dissolved into isopropanol and diluted to 60% with distilled water. Then cells were washed with distilled water three times. For PAS staining, cultured cells were stained by periodic acid-Schiff (MUTO PURE CHEMICALS) following the manufacturer’s instructions. For paraffin-embedded spheroids, the same procedure was carried out after deparaffinization. For ICG uptake assay, indocyanine green (Wako) was added in the medium at 0.1 mg/ml and incubated for 1 hour, followed by washing with PBS three times.
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6

BV2 Cell Culture and Screening

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BV2 cells were cultured in either DMEM (high glucose; Wako) or DMEM/nutrient mixture F-12 (DMEM/F12; Thermo Fisher Scientific) containing 10% fetal bovine serum (FBS), 100 units penicillin and 100 mg streptomycin (P/S; Thermo Fisher Scientific). For screening, BV2 cells were cultured in DMEM with 10% FBS and P/S in the presence or absence of 150 μM L-alanine (Wako), 50 μM L-glutamic acid (Wako), 50 μM L-aspartic acid (Wako), 50 μM L-asparagine (Wako), 150 μM L-proline (Wako), 0.0052 pM CuSO4 (Wako), 1.5 pM FeSO4 (Wako), 1.5 pM ZnSO4 (Wako), 150 nM linoleic acid (Wako), 500 nM lipoic acid (Sigma), 15 nM biotin (Sigma), 500 nM vitamin B12 (Wako), and 15 μM hypoxanthine (Sigma). Pyridoxalphosphate-6-azophenyl-2',4'-disulfonic acid tetrasodium salt (PPADS) was purchased from Alexis Corporation. Dipyridamole (DY) and allopurinol (ALP) were purchased from Tokyo Chemical Industry. Hoechst 33342 was purchased from Thermo Fisher Scientific. DAPI was purchased from Dojindo. FAT3 siRNAs (NM_001080814, siRNA ID; SASI_Mm02_00293873) and MISSION siRNA universal negative control (SIC001) were purchased from Sigma; 50 nM FAT3 siRNAs were transfected using Lipofectamine RNAi Max Reagent (Thermo Fisher Scientific) according to the manufacturer’s instructions.
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7

Sodium Polysulfides Synthesis and Characterization

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Sodium polysulfides (Na2Sn) were purchased from the DOJINDO chemical laboratory, Japan. Human albumin 25% “BENESIS” was provided by the Japan Blood Products Organization (Tokyo, Japan). Spectra pore 7 (MWCO: 3500) as a sulfur-free dialyzed membrane, was purchased from Repligen, USA. Ascorbic acid, dithiothreitol (DTT), zinc acetate dihydrate, LabAssay™ Creatinine, and linoleic acid were purchased from FUJIFILM Wako Pure Chemical Corporation, Osaka, Japan. The BCA protein assay kit and BUN Colorimetric Detection Kit were obtained from Thermo Fisher Scientific, Waltham, MA, USA. Other chemicals were of the best grades commercially available, and all solutions were made using deionized water.
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8

Bacterial Growth Inhibition Assay

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Lauric acid, myristic acid, palmitic acid, stearic acid, oleic acid, and glutaraldehyde were purchased from Tokyo Chemical Industry Co. Ltd. (Tokyo, Japan). Caprylic acid, capric acid, linoleic acid, SLS, sodium chloride (NaCl), disodium hydrogen phosphate 12-water (Na2HPO4•12H2O), potassium dihydrogen phosphate (KH2PO4), sodium chloride (KCl), potassium hydroxide (KOH), hydrochloric acid (HCl), manganese (II) chloride tetrahydrate (MnCl2•4H2O), magnesium sulfate heptahydrate (MgSO4•7H2O), iron (II) sulfate heptahydrate (FeSO4•7H2O), calcium chloride dihydrate (CaCl2•2H2O), agar, crystal violet, Hank’s balanced salt solution (HBSS)(+) and 99.5% ethanol (EtOH) were purchased from FUJIFILM Wako Pure Chemical Corporation (Osaka, Japan). SLES was purchased from the NOF Corporation (Tokyo, Japan). The Dulbecco’s phosphate-buffered saline (d-PBS)(+) preparation reagent (with Ca and Mg) (100×) and fetal bovine serum (FBS) were purchased from Nacalai Tesque (Kyoto, Japan) and Thermo Fisher Scientific K.K. (Tokyo, Japan), respectively. WELPAS® antiseptic solution for hands (0.2%), an alcohol-based disinfectant, was purchased from Maruishi Pharmaceutical Co. Ltd. (Osaka, Japan).
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9

Analysis of Fatty Acid Composition

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All the chemicals used for this study were of analytical grade. Linoleic acid (18:2 cis-9,12), oleic acid (18:1 cis-9), anhydrous pyridine, ethanol, methanol, and formic acid were purchased from FUJIFILM Wako Pure Chemical Corporation (Kyoto, Japan). Acetonitrile was purchased from Nacalai Tesque (Kyoto, Japan).
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10

Soybean Larvae Metabolite Analysis

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Plants and Insects Soybean (Var. Enrei) and S. litura larvae were reared as previously described (Murakami et al. 2014) .
Chemicals L-α-[ 13 C 9 , 15 N]Phenylalanine was purchased from Cambridge Isotope Laboratories, Inc. (Tewksbury, MA, USA). Daidzein and formononetin were purchased from LKT laboratories, Inc. (St. Paul, MN, USA). Genistein and apigenin were purchased from Tokyo Chemical Industry Co, Ltd. (Tokyo, Japan). Kaempferol and 4′,7-dihydroxyflavone were purchased from Extrasynthese (Genay, France). 7-Hydroxyflavone, daidzin, linolenic acid, linoleic acid, L-glutamine, trimethylamine, and ethyl chloroformate were purchased from Wako Pure Chemical Industries, Ltd. (Osaka, Japan). Tetrahydrofuran was purchased from Kanto Chemical Co., Inc. (Tokyo, Japan). Gut extracts and elicitor solutions were prepared in phosphate buffer (50 mM Na 2 HPO 4 -NaH 2 PO 4, pH 8).
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