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Sybr premix ex taqtm 2 reagent kit

Manufactured by Takara Bio
Sourced in United States

The SYBR® Premix Ex TaqTM II reagent kit is a real-time PCR reagent designed for quantitative gene expression analysis. It contains a DNA polymerase, buffer, and SYBR® Green I dye, which allows for the detection and quantification of target DNA sequences.

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10 protocols using sybr premix ex taqtm 2 reagent kit

1

qRT-PCR Analysis of Immune and Intestinal Genes

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Real-time qRT-PCR was used to determine the levels of cytokine genes and intestinal tight junction gene products in splenic lymphocyte and intestinal samples from immunized mice using a CFX96TM Real-Time PCR Detection System (Bio-Rad, Hercules, CA, USA). Total RNA was extracted from intestinal tissues and spleen with total RNA extraction kits (TaKaRa, Dalian, China) according to the manufacturer’s instructions [16 (link)]. Total RNA was converted to cDNA using the PrimeScriptTM RT reagent Kit with gDNA Eraser (TaKaRa, Dalian, China) [17 (link)]. The cDNA products were used for real-time PCR with a SYBR Premix Ex TaqTM II reagent kit (TaKaRa, Dalian, China), and the specific primers used are listed in the Table S1 [18 (link)]. The Livak method (2−∆∆CT method) was used to calculate the fold change compared to β-actin gene controls [19 (link),20 (link)].
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2

Quantitative RNA Expression Analysis

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Total RNA was extracted from EC cells using TRIzol reagent (Takara, Tokyo, Japan). Total RNA was reverse transcribed into first-strand cDNA using a cDNA Reverse Transcription Kit (Takara). A SYBR® Premix Ex TaqTM II reagent kit (Takara) was applied to perform RT-qPCR with an ABI7500 real-time qPCR system (ABI Company, Oyster Bay, NY, USA). Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) served as the internal reference. The relative gene expression was analyzed applying the 2−ΔΔCt method [15 (link)]. Sequences of primers used for RT-qPCR are:
UBE2J1: Forward 5′−GTACATCGTACGGACTCCAG−3′,
Reverse 5′−TCATGGAGGTATTCTTAGCTACAG−3′,
GAPDH: Forward 5′−AGAAACGGCTACCACATCCA−3′,
Reverse 5′−CACCAGACTTGCCCTCCA−3′.
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3

Real-time qPCR Expression Analysis

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Total RNA content was extracted using Trizol reagent kits. Primers used are presented in Table 1 (Takara Bio Inc., Tokyo, Japan). Total RNA was reversely transcribed into complementary DNA (cDNA) using PrimeScript RT reagent kits (RRO36A, Takara Biotechnology Ltd., Dalian, Liaoning, China). A SYBR® Premix Ex TaqTM II reagent kit (RR820A, Takara) was applied to perform RT-qPCR with an ABI7500 real-time qPCR system (7500, ABI Company, Oyster Bay, NY, USA). U6 was regarded as the internal reference for miR-34c-3p. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was used as an internal reference for SNHG14 and WISP1. Relative quantification was calculated using the 2-△△CT method.

Primer sequences for RT-qPCR

Sequence (5′-3′)
SNHG14F: ACCTGCAAGCTTTTTGACCC
R: AGCAGACAAAGAAAAACCCCAAT
miR-34c-3pF: GCCCAATCACTAACCACACGG
R: GTGCAGGGTCCGAGGT
WISP1F: ACCACCTGTGGCCTAGGTAT
R: CCTGCGAGAGTGAAGTTCGT
U6F: GTGATCACTCCCTGCCTGAG
R: GGACTTCACTGGACCAGACG
GAPDHF: CCGCATCTTCTTGTGCAGTG
R: CCCAATACGGCCAAATCCGT

RT-qPCR Reverse transcription quantitative polymerase chain reaction, SNHG14 Small nucleolar RNA host gene 14, miR MicroRNA, WISP1 Wnt1-inducible signaling pathway protein 1, GAPDH Glyceraldehyde-3-phosphate dehydrogenase, F Forward, R Reverse

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4

Quantitative RT-PCR Analysis of RNA

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Total RNA was extracted from the obtained tissues and cultured cells using TRIzol reagent (Invitrogen). The purity and concentration of the extracted RNA was evaluated using a Nanodrop 3000 (ThermoFisher, Scotts Valley, CA, USA). A high-capacity cDNA reverse transcription kit (Takara, Kyoto, Japan) was used to synthesize complementary DNA. Then, qRT-PCR was performed using SYBR® Premix Ex TaqTM II reagent kit (Takara) on a ABI 7900HT Fast Real-Time PCR System (Applied Biosystems, Foster City, CA, USA) for 45 cycles (95 °C for 3 min, 95 °C for 15 s, and 60 °C for 1 min). U6 was used as internal control for miR-452-3p and β-actin for all others. The primers used are listed in Supplementary Table 1, which were synthesized by Shanghai Sangon Biotech Co., Ltd (Shanghai, China). The specificity of all PCR products was assessed by melting curve analysis. Relative gene expression was analyzed using the 2−ΔΔCt method.
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5

Quantifying RNA Expression Via RT-qPCR

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A MiRNeasy Mini Kits (217004, QIAGEN, Hilden, Germany) were utilized to extract the total RNA content from the cells after transfection. The obtained total RNA was subsequently reversely transcribed into complementary DNA (cDNA) (10 μL) with a PrimeScript RT kit (RR036A, Takara Biotechnology Ltd., Dalian, Liaoning Province, China). Reverse transcription quantitative polymerase chain reaction (RT-qPCR) was performed using a SYBR® Premix Ex TaqTM II reagent kit (RR820A, Takara) on an ABI7500 real-time PCR instrument (Applied Biosystems, Carlsbad, CA, USA). The primer sequences of DPP10-AS1, miR-127-3p, ADCY1, CD133, CD44, Lgr5, ADLH1, U6 (as the internal control for miR-127-3p) and glyceraldehyde-3-phosphate dehydrogenase (GAPDH, as the internal control for DPP10-AS1 and other genes) were synthesized by Takara (Table 2). The 2-ΔΔCt method was performed to determine the relative expression levels. Each experiment was repeated three times.
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6

RT-qPCR Analysis of CircSLC7A6, miR-107, and ABL2

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The RNA extraction was performed using Trizol reagent (Invitrogen, Carlsbad, CA). Then, Takara® Reverse transcription kit (TaKaRa, Kyoto, Japan) was used to synthesize cDNA. RT-qPCR was performed by SYBR® Premix Ex TaqTM II reagent kit (TaKaRa, Kyoto, Japan) with an ABI 7500 real-time PCR system (Applied Biosystems, CA, USA). GAPDH and U6 were used for normalization. The Relative expression was calculated using the 2−ΔΔCq method. The primer sequences were presented in Table 1.

Primer sequences for RT-qPCR

GeneDirectionSequence (5ʹ-3ʹ)
circSLC7A6forwardCCTTTGCAGAAGTCACCGGG
 reverseCCCAGGAGACCACAAAGCTAC
miR-107forwardGCATCGTTCCTTCAAGCCGATCT
 reverseTGGGTGAGTCGTTCGG
ABL2forwardCTGCTGCTCAACACCACCT
 reverseGCCACATATTCTGTCAGGAACC
GAPDHforwardACCACAGTCCATGCCATCAC
 reverseTCCACCACCCTGTTGCTGTA
U6forwardGCAGGAGGTCTTCACAGAGT
 reverseTCTAGAGGAGAAGCTGGGGT
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7

Trizol-Based RNA Extraction and RT-qPCR Analysis

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The RNA extraction was performed with Trizol reagent (Invitrogen). Total RNAs were reversed into complementary DNA (cDNA) using PrimeScriptTM RT reagent kit. The SYBR® Premix Ex TaqTM II reagent kit (TaKaRa) was used for RT-qPCR on a 7500 Real-Time PCR System. Relative expression was calculated using the 2−ΔΔCq method with GAPDH or U6 as the control genes.
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8

Quantitative Real-Time PCR Analysis

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Total RNA was obtained from cultured cells and the tissues using TRIzol reagent according to the manufacturer’s instructions (ThermoFisher). The purity of the extracted RNA was assessed using a Nanodrop 3000 (ThermoFisher). The first strand of complementary DNA was synthesized using a high-capacity cDNA reverse transcription kit (Takara, Kyoto, Japan). Then, qRT-PCR was conducted utilizing SYBR® Premix Ex TaqTM II reagent kit (Takara) on an ABI 7900HT Fast Real-Time PCR System (Applied Biosystems, Foster City, CA, USA) for 40 cycles (95 °C for 3 min, 90 °C for 15 s, and 60 °C for 1 min). The primer sequences for qRT-PCR are listed in Supplementary Table 1, which were designed and synthesized by Sangon (Shanghai, China). U6 was selected as internal control for miR-155-5p and β-actin for all others. The specificity of all PCR products was checked using melting curve analysis. Relative gene expression was determined by the 2−ΔΔCt method.
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9

RNA Extraction and qRT-PCR Protocol

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The TRIzol reagent kit (Invitrogen, CA, USA) was used to extract total RNA from the obtained tissues and cultured cells. The extracted RNA was then purified and quantified using the Nanodrop 3000 (ThermoFisher, Scotts Valley, CA, USA). The first-strand complementary DNA was synthesized utilizing a high-capacity cDNA reverse transcription kit (Takara, Kyoto, Japan). qRT-PCR was conducted using SYBR® Premix Ex TaqTM II reagent kit (Takara) on an ABI 7900HT Fast Real-Time PCR System (Applied Biosystems, Foster City, CA, USA) for 40 cycles (95°C for 2 min, 95°C for 10 sec, and 60°C for 30 sec). Melting curve analysis was used to evaluate the specificity of all PCR products. Relative gene expression was quantitated using the 2−ΔΔCt method. The sequences of mRNA primers were designed and synthesized by Shanghai Sangon Biotech Co., Ltd (Shanghai, China). The primers were listed in Supplementary Table 1. β-Actin was used as an internal control.
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10

Quantification of Brain miRNA and mRNA

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After being anesthetized using pentobarbital sodium, brain tissues were collected. Next, the brain tissues of the mice were homogenized by TRIzol reagent (Invitrogen, USA) on ice to extract total RNA. Afterwards, the extracted RNA was reverse transcribed into cDNA utilizing High Capacity cDNA Reverse Transcription Kits (Applied Biosystems, Foster City, CA, USA). RT-qPCR analysis was conducted employing a SYBR® Premix Ex TaqTM II reagent kit (RR820A, Takara) on a 7500 Real-Time PCR System (Applied Biosystems). U6 served as the endogenous control for miR-485-5p. The detection results for mRNAs (PACS1, MON2, TCTA, SOX10, and PPARGC1A) were normalized to GAPDH. Expression fold changes were calculated adopting the 2−ΔΔCt method. The raw data of the 2−ΔΔCt can be found in Table S1.
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