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Chambered slides

Manufactured by Ibidi
Sourced in Germany

Chambered slides are cell culture tools that provide a controlled environment for observing and analyzing cells. They consist of a glass or plastic slide with one or more chambers or wells. Cells can be seeded, cultured, and examined within these chambers.

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4 protocols using chambered slides

1

Apoptosis Analysis of African Swine Fever Virus

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Purified PBMs, seeded at 3 × 106 cells/mL in chambered slides (Ibidi, Germany), were cultured in RPMI supplemented with 10% heat-inactivated FCS, 100 IU/mL penicillin, 100 µg/mL streptomycin, and 100 ng/mL porcine CSF for 3 d. The cells were infected with Benin 97/1 or BeninΔA179L at 0.25 MOI for 16 h. The cells were fixed in 4% paraformaldehyde and washed with PBS, followed by terminal deoxynucleotidyl transferase-dUTP nick end labeling (Click-iT Plus TUNEL Assay for In Situ Apoptosis Detection, Thermo Fisher Scientific), according to the manufacturer’s protocol. The cells were subsequently stained with mouse anti-p30 C18 (63 (link)) for 1 h at room temperature (RT) and the corresponding goat antimouse IgG (H + L) cross-adsorbed secondary antibody, Alexa Fluor 488 (Thermo Fisher Scientific), at 1 μg/mL for 1 h at RT. Nuclei were labeled with Hoechst 33342, diluted in PBS at a final concentration of 5 µg/mL, and incubated at RT for 15 min. Imaging was performed using a Leica TCS SP8 confocal microscope with a 40× oil immersion objective. The total number of cells and TUNEL-positive cells was counted using ImageJ 1.x (64 (link)).
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2

Tracking Mitotic Timing in DLD-1 Cells

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DLD-1 cells expressing retrovirus-integrated H2B-mRFP were plated in chambered slides (Ibidi) and switched to CO2-independent medium (Thermo Fisher) supplemented with 10% fetal bovine serum prior to filming by time-lapse microscopy. Images were acquired on a DeltaVision Core system in a controlled 37°C environment at 4-min intervals for 12 hours using 40× magnification (10 × 4μm z-sections) and low powered exposures. Maximum intensity projections were generated using softWoRx program and movies were analyzed in ImageJ. Mitotic timing is defined as the duration from nuclear envelope breakdown to anaphase onset.
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3

Live-cell Imaging of Agonist Responses

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Whole culture experiments were conducted using media, PBS, and agonist dilutions in media prewarmed to 37°C in the incubator. Untreated cell supernatant was taken from a culture flask plated and prepared alongside the chambered slides (Ibidi 80826). One hour before the experiment, the media in the wells was changed to DMEM with 10% HIFBS and hoechst stain. At the start of the experiment, cells were treated by diluting the agonist 1:10 in the wells and mixing by pipette and rocking, then incubating at 37°C and 5% CO2 for the indicated stimulation time, diluting the well contents 4 times at 1:6 ratio with warm, untreated media, then incubating further for a total of 30 minutes incubation time. Cells were washed with warm PBS and fixed with Cytofix (BD Biosciences 554655) at 4°C. Fixed cells were washed once more and imaged in PBS. For live-cell imaging, instead of fixing the cells were imaged immediately at 15 minutes.
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4

Centromere 4 Enumeration FISH Protocol

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For FISH, TRIP13AID cells were cultured in chambered slides (IBIDI) with or without IAA for 5 days and fixed in cold methanol:acetic acid (3:1) for 15 mins and dehydrated with 80% ethanol.
Centromere 4 enumeration painting probes (MetaSystems) was applied to slides, sealed with a coverslip, co-denatured at 75 °C for 2 mins, and hybridized overnight at 37 °C in a humidified chamber. Slides were subsequently washed with 0.4× SCC at 72 °C for 2 mins and rinsed in 2× SCC, 0.05% Tween-20 at room temperature for 30 s. Slides were then rinsed in water, counterstained with DAPI, and mounted in anti-fade solution. FISH images were acquired on a DeltaVision Core system (GE Health Sciences) at ×60 magnification (5 × 1μm z-sections) and maximum intensity projections were generated using softWoRx software.
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