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12 protocols using anti human cd34 apc

1

CD34+ CB Cell Expansion and Characterization

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CD34+ CB cells (1 × 106 cells/ml) were labeled with 5 μl carboxyfluorescein diacetate succinimidyl ester (Biolegend, Cat: 423801) according to the manufacture’s guidelines. Labeled cells were cultured for 24 h before they were stained with APC-labeled anti-human CD34 antibody (Biolegend, Cat: 343608) and sorted for CD34+CFSE+ cells using a FACS MoFlo (Beckman). Sorted cells were then resuspended in HSC expansion medium supplemented with DMSO (0.01%) or JNK-IN-8 (2 µM). Cell aliquots after 2 and 4 days in culture were stained with APC anti-human CD34 (Biolegend, Cat: 343608) and APC-Cy7 anti-human CD45RA antibody (Biolegend, Cat: 304128) before cells were analyzed for CFSE intensity by FCS express version 6 software.
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2

Phenotypic Analysis of Hematopoietic Cells

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The cells were stained with monoclonal antibodies (mAb) and analyzed using a FACS Verse (Becton Dickinson, Franklin Lakes, NJ). The following mAbs were used for the phenotypic analysis: eFluor450‐labeled anti‐CD3 (eBiosciences, San Diego, CA, 48‐0037‐41), PE‐Cy7‐labeled anti‐CD3 (BD PharMingen, San Diego, CA, 563423), FITC‐labeled anti‐TCR Vγ9 (Beckman Coulter, Brea, CA, IM1463), Human APJ APC‐conjugated antibody (R&D systems, Minneapolis, MN, FAB856A), APC anti‐human CD34 (Biolegend, San Diego, CA, 343608) and Anti‐Human CD43 PE (eBioscience, 12‐0439).
On days 4 and 12 in hematopoietic differentiation, the cells were treated with 500 µl of Accutase at 37°C for 15 minutes and washed with 1% BSA in PBS after centrifuging, followed by reactions with antibodies. On day 12, the dissociated cells were resuspended in StemPro34 medium and plated onto plastic at 37°C for 1 hour, and the floating cells were collected to remove any adherent cells. Dead cells were excluded by 7‐AAD staining.
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3

Purification and Expansion of CD34+ HSPCs

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Human CD34+ HSPCs mobilized peripheral blood purchased from AllCells (Alameda, CA, USA) and thawed per manufacturer’s instructions. CD34+ HSPCs were purified from umbilical cord blood collected donated under informed consent via the Binns Program for Cord Blood Research at Stanford University and used without freezing. In brief, mononuclear cells were isolated by density gradient centrifugation using Ficoll Paque Plus. Following two platelet washes, HSPCs were labeled and positively selected using the CD34+ Microbead Kit Ultrapure (Miltenyi Biotec, San Diego, CA, USA) per manufacturer’s protocol. Enriched cells were stained with APC anti-human CD34 (Clone 561; Biolegend, San Jose, CA, USA) and sample purity was assessed on an Accuri C6 flow cytometer (BD Biosciences, San Jose, CA, USA). Cells were cultured at 37 °C, 5% CO2, and 5% O2 for 48 hours prior to gene editing. Culture media consisted of StemSpan SFEM II (Stemcell Technologies, Vancouver, Canada) supplemented with SCF (100 ng/ml), TPO (100 ng/ml), Flt3-Ligand (100 ng/ml), IL-6 (100 ng/ml), UM171 (35 nM), and StemRegenin1 (0.75 µM).
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4

Phenotypic Analysis of BMMSCs

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BMMSCs were analyzed by flow cytometry (DxFLEX, Beckman Coulter, USA). Cells at P3 were incubated in PE anti-human CD73 (Ecto-5′-nucleotidase) (BioLegend, USA), PE anti-human CD73 (Ecto-5′-nucleotidase) (BioLegend, USA), APC anti-human CD90 (Thy1) (BioLegend, USA), APC anti-human CD34 (BioLegend, USA), Alexa Fluor® 488 anti-human CD45 (BioLegend, USA), and Alexa Fluor® 488 anti-human CD105 (Abcam, USA) at concentrations specified by the manufacturer. Corresponding isotype-identical antibodies served as controls.
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5

Flow Cytometry Analysis of Hematopoietic Cells

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Equal numbers of cells were placed in flow cytometry tubes and washed with PBS by centrifugation at 800 rpm for 3 min. Flow cytometry antibodies (anti-human CD34-APC and anti-human c-kit-FITC [both from Biolegend]) were then added to each cell pellet (at an antibody to staining buffer ratio of 1:100), and the cells were incubated for 30–45 min on ice in the dark. Next, the cells were washed twice with 1mL PBS by centrifugation at 800 rpm for 3 min. The cells were resuspended in 200 μL PBS, and we transferred the cell suspension to a 96-well plate for acquisition on a BD FACSVerse flow cytometer (BD Biosciences).
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6

Isolation and Purification of CD34+ Cells

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Mononuclear cells were isolated by density gradient centrifugation using Lymphoprep™ (STEMCELL Technologies, Vancouver, Canada). CD34+ cells were subsequently selected using the human CD34 MicroBead kit (Miltenyi Biotec, Cologne, Germany) according to the manufacturer’s instructions. The labeled cell suspension was passed three times through the magnet to obtain a purity of >95%. Sample purity was assessed on a BD LSR2 with anti-human CD34 APC and anti-human CD3 Pe-Cy7 (BioLegend, San Jose, CA, USA).
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7

Multilineage Engraftment of Edited HSPCs

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Between 14 and 16 weeks post transplantation of edited CD34+ HSPCs, mice were euthanized and bone marrow was harvested from tibia, femur, pelvis, sternum and spine using a pestle and mortar. Mononuclear cells (MNCs) were enriched using a Ficoll gradient centrifugation (Ficoll-Paque Plus, GE Healthcare) for 25 min at 2000 g at room temperature. The samples were then stained for 30 min at 4 °C with the following antibodies: monoclonal anti-human CD33 BV 421(1:50 dilution, 6 ul in 300 ul of MNCs pelleted in MACS buffer (1× PBS, 2% fetal bovine serum, 2 mM EDTA); anti-human HLA-ABC FITC (1:100 dilution; W6/32; BioLegend); anti-human CD19 PerCp-Cy5.5 (1:20 dilution; HIB19; BD Biosciences); anti-mouse CD45.1 PE-Cy7 (1:200 dilution; A20; eBiosciences); anti-human CD34 APC (1:50 dilution; 581; BioLegend); Multilineage engraftment was established by the presence of myeloid cells (CD33+) and B cells (CD19+) in engrafted human cells (mCD45-, HLA-A/B/C+ cells).
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8

Mesenchymal Stem Cell Surface Marker Analysis

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The uncharacterized cells (1 × 106 cells) were harvested and the cell surface antigen molecules were analyzed by BD FACS Canto Flow cytometer (BD Biosciences, San Jose, CA, USA). The cells were detected for MSCs specific markers using antibodies as follows: anti-human CD73 (APC/Cy7) (Biolegend, San Diego, CA, USA), anti-human CD90 (PE) (Biolegend), anti-human CD105 (Alexa Flour® 488) (Biolegend), and anti-human CD146 (PerCP/Cy5.5) (Biolegend). An antibody against hematopoietic stem cell marker, anti-human CD34 (APC) (Biolegend), was used as a negative control. The level of cell surface antigen molecules expression was analyzed using the BD FACSDiva™ software (BD Biosciences).
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9

Designing Universal ELANE Exon 4 sgRNA

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To design a universal sgRNA targeting ELANE exon 4, the coding sequence of ELANE exon 4 was mapped to the human genome (Homo sapiens, hg38) using the latest version of CrispRGold (https://crisprgold.mdc-berlin.de) to identify potential off-target sites, GC content, and folding energy between the targeting sequence and the scaffold RNA. sgRNA with the lowest off-target risk score >11, melting temperature (Tm) ≤60°C, and a scaffold-folding energy ≤20 kcal/mol was selected.42 (link),43 (link) Synthetic sgELANE-ex4 and sgELANE-L172P were purchased from Synthego (Menlo Park, CA, USA). Cas9 protein was purchased from Integrated DNA Technologies (Leuven, Belgium). The following antibodies were purchased from BioLegend (Koblenz, Germany): anti-human CD45-Brilliant Violet (BV)605, anti-mouse CD45-phycoerythrin (PE)/Cy7, anti-human CD19-fluorescein isothiocyanate (FITC), anti-human CD3e-allophycocyanin (APC), anti-human CD15-APC, anti-human CD11b-PE/Cy7, anti-human CD16-BV711, anti-human CD66b-FITC, anti-human CD33-BV785, anti-human CD56-BV421, anti-human CD34-APC, anti-human CD38-PE/Cy7.
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10

MSC Surface Marker Characterization

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The uncharacterized cells (1 x 10 6 cells) were harvested and the cell surface antigen molecules were analyzed by BD FACS Canto Flow cytometer (BD Biosciences, San Jose, CA, USA). The cells were detected for MSCs markers using antibodies as follows: anti-human CD73 (APC/Cy7) (Biolegend, San Diego, CA, USA), anti-human CD90 (PE) (Biolegend), anti-human CD105 (Alexa Flour® 488) (Biolegend), and anti-human CD146 (PerCP/Cy5.5) (Biolegend). An antibody against hematopoietic stem cell marker, anti-human CD34 (APC) (Biolegend), was used as a negative control.
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