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Pcpgfree promoter lucia

Manufactured by InvivoGen

The PCpGfree-promoter-lucia is a plasmid that contains a CpG-free promoter driving the expression of the Lucia luciferase reporter gene. This reporter can be used to assess the activity of the CpG-free promoter in various cell lines.

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3 protocols using pcpgfree promoter lucia

1

Luciferase Reporter Assay Protocol

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Luciferase reporter assays were carried out as described previously [42 (link)]. Briefly, genomic regions of interest were amplified by PCR from dermal fibroblast genomic DNA and cloned into pGL4.10, pGL4.23 (Promega), or pCpGfree-promoter-lucia (Invivogen). Open reading frames were obtained from the Genomics and Proteomics core facility (DKZF) and cloned into pDest11-based Gateway expression vectors (Thermo Fisher Scientific). Reporter constructs and open reading frames were validated by Sanger sequencing (GATC Biotech, Constance, Germany). All cell lines were transfected with 40 ng of reporter plasmid and 5 ng of open reading frame plasmid using TransIT-LT1 transfection reagent (Mirus Bio) in 384-well plates. Readout was carried out 48 h after transfection. Data were normalized to co-transfected luciferase reporter vectors (pRL-TK-renilla luciferase (Promega) for pGL4-based reporters and pGl4-CMV-firefly luciferase for pCpGfree-lucia reporters). In vitro methylation of reporters was carried out using M.SssI CpG methyltransferase (Thermo Fisher Scientific).
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2

Cloning and Validating Genomic Reporters

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Genomic regions-of-interest were amplified by PCR from dermal fibroblast DNA and cloned into pGL4.10, pGL4.23 (both Promega) or pCpGfree-promoter-lucia (Invivogen). Reporter constructs were validated by Sanger sequencing (GATC Biotech). Site-directed mutagenesis was carried out according to standard protocols. HEK293T cells were transfected with TransIT-LT1 transfection reagent (Mirus Bio) and readout was carried out 48 h after transfection. Data were normalized to co-transfected luciferase reporter vectors (pRL-TK-renilla luciferase (Promega) for pGL4-based reporters and pGl4-firefly luciferase for pCpGfree-lucia reporters). In vitro methylation of reporters was carried out using M.SssI CpG methyltransferase (Thermo Scientific).
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3

Luciferase Assays for FCGR3A and FCGR3B

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Luciferase reporter assays were carried out as described previously (30 ). Sequences of the FCGR3A and FCGR3B 5′-untranslated regions were PCR amplified using primers specific for each gene (listed in Supplementary Table 1) and inserted into the CpG-free reporter vector pCpGfree-promoter lucia (Invivogen). Sequences were verified with Sanger Sequencing at the Plant-Microbe Genomics Facility (The Ohio State University). For methylation-specific assays, plasmids were methylated in vitro using M.SssI CpG methyltransferase (Thermo Fisher Scientific). Luciferase assays were carried out in HEK293T cells using TransIT-LT1 transfection reagent (Mirus Bio) according to the manufacturer’s instructions. Jurkat, YT and K562 cells were transfected with a Nucleofector device (Lonza) using Amaxa Cell Line Nucleofector Kit V with programs X-001, O-017 and T-016, respectively. Luciferase activity was assessed 48h after transfection on a DTX880 Multimode Detector (Beckman Coulter). Luciferase signals were normalized to co-transfected pGl4-CMV-firefly luciferase vector (Promega). Luciferase activity values were displayed relative to an unmodified pCpGfree-promoter lucia plasmid.
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