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6 protocols using a1 plus camera

1

Characterization of Mutant hCAR Localization

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COS-1 cells were seeded on a 48-well plates (80,000 cells/well) and were incubated for 24 h. The cells were transfected (Lipofectamine® 3000) with 100 ng/well pEGFP-hCAR+Ala construct. The cells were treated 24 h after transfection with CITCO (10 μM), erlotinib (10 μM), phenobarbital (500 μM), LEF, and TER (30 μM), or vehicle (0.1% DMSO). For final counting cells were stained with Hoechst 33342 (10 μg/ml, for 5 min in CO2 incubator). Confocal microscopy was performed at 0, 24, and 48 h after treatment with a Nicon Ti microscope and Nikon A1 plus camera (Nikon, Japan) using 405 and 488 nm lasers. The pinhole diameter was set at 35.76 μM and microphotographs were taken using NIS Elements AR 4.20 software (Laboratory Imaging, Czechia). Four photographs of every treatment were taken and cytoplasmic, nuclear and mixed localization was determined in at least 100 cells in three independent experiments (n = 3). pEGFP-hCAR construct kindly donated by Dr. Y. Kanno (Kanno et al., 2007 (link)) was used for site directed mutagenesis (GeneArtTM Site-Directed Mutagenesis System, Thermo Fisher Scientific, Waltham, MA, United States) to insert extra alanine at position 271 of the hCAR LBD with primers 5′-CCCTCTTCTCTCCTGCTGACCGACCTGGAGTTAC-3′ and 5′-GTAACTCCAGGTCGGTCAGCAGGAGAGAAGAGGG-3′ as previously described (Chen et al., 2010 (link)).
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2

Visualizing hCAR Localization in COS-1 Cells

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COS-1 cells were seeded on 48-well plates (20,000 cells/well) and, 24 h after seeding, were transfected (Lipofectamine™ 3000) with 100 ng/well pEGFP-hCAR+Ala construct. The cells were treated with CITCO (10 μM), diazepam, nordazepam, temazepam and oxazepam (10 μM and 30 μM), or control (DMSO 0.1%) for 24 h. For microscopy, living cells were stained with Hoechst 33342 (0.2 µM, 5 min at 37 °C) (Sigma-Aldrich). Confocal microscopy was performed with a Nicon Ti ECLIPSE microscope and Nikon A1 plus camera (Nikon, Tokyo, Japan) using 405 and 488 nm lasers. Microphotographs were taken using the NIS Elements AR 4.20 software (Laboratory Imaging, Czech Republic). Four microphotographs of every treatment were taken and cells with green fluorescence protein (GFP) cytosolic or nuclear localization was counted in more than 150 cells in each picture. Each experiment was performed in biological triplicates (n = 3).
pEGFP-hCAR construct kindly donated by Dr. Y. Kanno [21 (link)] was used for site directed mutagenesis (using GeneArtTM Site-Directed Mutagenesis System, Thermo Fisher Scientific, Waltham, MA, USA). To insert extra alanine at position 271 of the CAR-LBD, the primers were used as previously described (50-CCCTCTTCTCTCCTGCTGACCGACCTGGAGTTAC-30 and 50-GTAACTCCAGGTCGGTCAGCAGGAGAGAAGAGGG-30) [18 (link)].
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3

Laser Scattering Confocal Imaging of Nanospheres

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For laser scattering confocal microscopy, BMM were seeded onto confocal dishes (SPL, glass bottom, 101350, SPL Life Sciences, Gyeonggi-do, Korea) in a density of 100,000 cells/cm2. After overnight stabilization, cells were treated for 1 h with vehicle (DMEM), RhB solution (15 µg/mL) or with RhB-loaded nanosphere samples (300 μg/mL). Living cell nuclei were stained with Hoechst 33,342 (0.2 µM, 5 min at 37 °C). For microscopy Nicon Ti ECLIPSE microscope and Nikon A1 plus camera (Nikon Instruments, Melville, NY, USA) using 405 and 561 nm lasers was used. The pinhole diameter was set to 19.16 µM and microphotographs were taken using the NIS Elements AR 4.20 software (Laboratory Imaging, Prague, Czech Republic). Three representative photographs of every treatment were taken.
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4

Imaging Nuclear Envelope Components in Cells and Tissues

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Cells were imaged on an ECLIPSE Ti-E inverted microscope (Nikon Instruments) controlled by NIS Elements software (Nikon Instruments) with a SPECTRA X light engine (Lumencor); Clara cooled CCD camera (Andor); 37°C environmental chamber; and the following Nikon objectives: 20× Plan Apo differential interference contrast (DIC) M N2 (NA 0.75), 40× Plan Apo DIC M N2 (NA 0.95), 60× Plan Apo λ (NA 1.42), and 100× APO (NA 1.49).
Imaging of nuclear envelope component lamin B1 for assessment in RPE1 cells and lamin A/C or lamin B1 assessment in histological sections of mouse tissues was performed at the Microscopy Imaging Center at the University of Vermont. Fixed cells or tissues were imaged using an A1R-ER confocal microscope (Nikon Instruments) controlled by NIS Elements software (Nikon Instruments) with a SOLA light engine (Lumencor); Nikon A1plus camera containing a hybrid resonant and high-resolution Galvano galvanometer scan head set on an inverted Ti-E system (Nikon Instruments); and the following Nikon objectives: 20× Plan Apo λ (NA 0.75), 40× Plan Fluor Oil DIC H N2 (NA 1.3), and 60× APO TIRF Oil DIC N2 (NA 1.49).
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5

Immunostaining Imaging Protocols

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All immunostaining was analyzed using a Zeiss Axio Imager.M2 microscope equipped with an Axiovision digital imaging system (Zeiss, Oberkochen, Germany) using a 20× objective or a Nikon Ti-E microscope with an A1R laser scanning confocal system (Nikon Instruments, Inc, Melville, NY) using a 60× objective. The Axio imager 20× objective has a Plan-apochromat with a numeric aperture of 0.8 M27. The Nikon A1R 60× oil objective has a Plan apochromat with a numeric aperture of 1.4. Imaging of tissue sections was performed at room temperature and all tissue sections were mounted in ProLong Gold Antifade reagent. The Axio Imager microscope was equipped with an AxioCam HRm Rev.3 camera. The Axiovision digital imaging system was used to export single-channel grayscale TIFF images for all images acquired on the Axio Imager. The Nikon A1R used a Nikon A1 plus camera. Nikon Elements software was used to export images as individual channel TIFF files. Adobe Photoshop (Adobe, San Jose, CA) was used to merge individual channel images into Red Green Blue (RGB).
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6

Live Imaging of CD8 T Cell Interactions

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Confocal fluorescent microscopy was carried out on scanning laser Nikon A1R + confocal microscope system equipped with Nikon TiE inverted microscope, Nikon A1plus camera, and four lasers with excitation lines at 405, 488, 561, and 640 nm. The system was fitted with heated stage, objective heater, and a motorized stage with autofocus. The ibidi chamber with preformed bilayers was placed on stage preheated at 37 °C. The cell samples were injected into the entry ports of the slide containing bilayer with displayed ligands. The stage positions were chosen during first two minutes after the sample loading. The selected stage positions were imaged every 2 min for 30 min using 60X/1.4NA objective of the microscope preheated at 37 °C. Bright-field, reflected light, and two fluorescent channels (Alexa Fluor 488 for anti-CD3 imaging and Cy5 for ICAM-1 imaging) of the confocal microscope were utilized to acquire images of interface formed by CD8 T cells interacting with the bilayer surface. The acquisition of the images was performed with Nikon NiS-Elements AR software (v. 4.50.00). MetaMorph (v7.7.2.0) and Nikon NiS-Elements AR (v. 4.50.00) software were employed for analysis and quantification of the images.
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