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31 protocols using citric acid

1

Analytical-Grade Reagent Preparation for Spectrophotometric Analysis

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The following chemicals were obtained from various suppliers: o-phthalaldehyde (OPA), disodium hydrogen phosphate, sodium dihydrogen phosphate, and sodium carbonate from Nacalai tesque (Kyoto, Japan); glycine and N-acetylcysteine (NAC) from Sigma (St. Louis, MO, USA); citric acid, sodium citrate, and sodium polyacrylate from Wako (Osaka, Japan); Triton X100 and ethanol (95%) from Sigma (St. Louis, MO, USA); alcohol from Shimakyu’s Pure Chemicals (Osaka, Japan); and hydrochloric acid from Union Chemical Works Ltd. (Taichung, Taiwan). All analytical-grade reagents were used without further purification. Ultra-pure water with a resistivity greater than 18.2 MΩ cm was prepared using a Direct-Q gradient system (Millipore, Milford, MA, USA).
Buffers were prepared by dissolving the following chemicals in deionized water and storing them at room temperature as the stock: borate buffer (0.1 M, pH 8–10 with NaOH), phosphate buffer (0.1 M, pH 6–8 with NaOH), and citrate buffer (0.1 M, pH 4–6 with NaOH). The 20% OPA reagent was prepared by mixing 2 g of OPA in 10 mL of 99% ethanol. The 1% OPA reagent was freshly prepared by dissolving 0.1 g OPA in 10 mL of ultra-pure water and then diluting it to 0.6, 0.5, 0.4, 0.3, and 0.2%.
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2

Volatile Standards Preparation and Characterization

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The volatile standards used in this study are shown in Additional File 4: Table S1. First, 2,4-dichloroaniline (99.5% purity) was purchased from Tokyo Chemical Industry Co., Ltd. (Tokyo, Japan) for the reagents. However, while n-heptyl β-D-glucopyranoside (98% purity) was purchased from Sigma-Aldrich, Inc. (St. Louis, MO, USA), dichloromethane (99.5% purity), liquid chromatography-mass spectrometry-grade methanol, citric acid, sodium phosphates, sodium fluoride (NaF), ascorbic acid, sodium hydroxide (NaOH) and 3-octanol (97% purity) were obtained from Wako Co. Ltd. (Osaka, Japan).
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3

Histological Processing of Mammary Tissue

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After washing in PBS, the dissected mammary glands and tumors were fixed in 4% paraformaldehyde–PBS overnight and for 2 days, respectively. After washing in PBS, samples were dehydrated gradually from 70% ethanol to 100% ethanol and then from 50% xylene in ethanol to 100% xylene, following paraffin replacement using a Leica ASP300 fully automatic closed tissue processor and paraffin-embedding using a Leica EG1160. The paraffin-embedded tissues were then cut into 5-μm thick sections using a Leica SM200R sliding microtome. The sections were gradually deparaffinized in xylene and then with ethanol, gradually decreasing from 100% to 50% ethanol, and washed with distilled H2O, and then stained in hematoxylin solution (0.25% hematoxylin (Nacalai Tesque), 0.05% sodium iodate (Nacalai Tesque), 12.5% potassium alum (Wako), and 0.25% citric acid (Wako)) for 10 min. After washing in distilled H2O, sections were blued in 0.1% saturated lithium carbonate at 37 °C for 5 min and then washed in distilled H2O and stained in eosin solution (1% eosin (Wako) and 0.02% glacial acetic acid) for 10 min. After washing in 90% and 100% ethanol, sections were soaked in xylene for 5 min and then mounted in MGK-S (Matsunami).
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4

Breast Cancer MCF-7 Cell Line Characterization

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The human breast adenocarcinoma (MCF-7) cell line was obtained from the Egyptian Holding Company for Biological Products and Vaccines (VACSERA, Giza, Egypt). Ammonium nitrate, magnesium sulfate, potassium nitrate, boric acid, cobalt chloride, cupric sulfate, manganese sulfate, potassium iodine, sodium molybdate, zinc sulfate, citric acid and sodium citrate were purchased from Wako Pure Chemical Industries® (Tokyo, Japan). Calcium chloride, dextrose, potassium hexacyanoferrate II, potassium hexacyanoferrate III and sodium carbonate were obtained from Merck® (Darmstadt, Germany), while potassium phosphate, sodium chloride, ferrous sulfate, Na2-EDTA2H2O, nicotinic acid, pyridoxineHCl, thiamineHCl, Fe-EDTA, 4-morpholineethanesulfonic acid, τ-inositol, sucrose, phytoagar, sodium phosphate, silymarin, triton X-100, 5-bromo-4-chloro-3-indoly-β-d-glucuronide and α-Rhamnase were purchased from Sigma-Aldrich Corp. (St. Louis, MO, USA). 17β-estradiol was purchased from Takeda Chemical Industries Ltd. (Osaka, Japan). Solvents used were of analytical grade unless mentioned and were purchased from Merck, J.T. Backer® (Deventer, The Netherlands) and Theo Seulberger® (Karlsruhe, Germany). Media and supplements for cell cultures were obtained from Gibco®/Invitrogen (Karlsruhe, Germany) and Greiner Labortechnik® (Frickenhausen, Germany).
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5

Anti-Cancer Compound Screening Protocol

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Compounds, such as NSC13626 were requested from National Institute of Health (Bethesda, MA, United States). HCT116 CRC line was obtained from Bioresource Collection and Research Center (Hsinchu, Taiwan). McCoy’s 5A cell culture medium, sulforhodamine B (SRB), dimethyl sulfoxide, ethylenediaminetetraacetate, propidium iodide, and Triton X-100 purchased from Sigma (St. Louis, MO, United States). Trichloroacetic acid (TCA), acetic acid, Trizma base, Tris–HCl, sodium chloride, sodium dodecyl sulfate, ethanol, citric acid, and Na2HPO4 were purchased from Wako Pure Chemical Industries (Osaka, Japan). Cocktail protease inhibitor was obtained from Calbiochem Research Biochemicals (Merck, Burlington, MA, United States). RNase A was purchased from Bioshop (Ontario, Canada).
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6

Amino Acid and Metal Complex Preparation

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l-Alanine, l-proline, l-serine, l-threonine, l-aspartic acid, l-glutamic acid, l-methionine, citric acid, [RuCl2(p-cymene)]2 (1) and deuterium oxide (D2O) were purchased from Wako Pure Chemical Industries (Osaka, Japan). l-Cysteine, l-penicillamine and sodium 3-(trimethylsilyl)-1-propanesulfonate (DSS) was obtained from Sigma-Aldrich (St. Louis, USA). S-Methyl-l-cysteine was purchased from Tokyo Chemical Industry (Tokyo, Japan). l-Valine was obtained from Kanto Chemical Company (Tokyo, Japan). These reagents were used without further purification.
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7

Quaternary CrFeNiCu Catalysts Synthesis

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CrFeNiCu quaternary
catalysts supported on Al2O3 were prepared using
a polymerized complex process and a post-H2-reduction treatment,
which was used in our previous study to prepare the FeNiCu ternary
system.37 (link),38 (link) The molar ratio of Cr/Fe/Ni/Cu/Al = x:0.1:0.1:0.1:1.0 (0 ≤ x
0.15) was expressed using a general formula, CrxFeNiCu. Calculated amounts (total amounts = 26 + 20x mmol) of Cr(NO3)3, Fe(NO3)3, Ni(NO3)2, Cu(NO3)2, and Al(NO3)3 (Wako Pure Chemical Industries,
Japan) and citric acid (300 mmol) (Wako Pure Chemical Industries,
Japan) were added in distilled and deionized water (180 mL) and stirred
vigorously at 80 °C for 2 h. Under vigorous stirring, ethylene
glycol (300 mmol) (Wako Pure Chemical Industries, Japan) was added
to the as-obtained clear solution. When stirred at 80 °C for
8 h, the solution was gradually changed into a viscous gel, which
was heated at 130 °C for 2 h. Then, the solid product was calcined
for 1 h at 600 °C and 900 °C for 2 h. To produce Al2O3-supported metal catalysts, the oxide precursor
thus obtained was ground into powder using an agate mortar and was
finally heated for 3 h at 900 °C under flowing H2.
The other quaternary metal catalysts were prepared in the same manner
by selecting from six 3d transition metals, i.e.,
Cr, Mn, Fe, Co, Ni, and Cu.
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8

Graphite Composite Fabrication Protocol

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Natural graphite powder (CFW-18AK, 18 μm nominal particle size), and UF resin were provided by Chuetsu Graphite Works (Osaka, Japan), and DIC Kitanihon Polymer (Tomakomai, Japan), respectively. According to the manufacturer, the resin has the following general physicochemical properties: 51% non-volatile solids content, 7.5 pH, 110 mPa s viscosity, and 1.2 formaldehyde/urea molar ratio. Ammonium chloride (99.5% purity), which is a curing agent, was purchased from Kanto Chemical (Tokyo, Japan). Citric acid (>99.5% purity), and calcium hydroxide (>96.0% purity) as a pH adjuster were purchased from Wako Pure Chemical Industries (Osaka, Japan), and Kanto Chemical, respectively. Sulfuric acid (96.0% concentration), potassium permanganate (99.3% purity), and hydrogen peroxide solution (34.5% concentration) for GO preparation were purchased from Kanto Chemical. All reagents were used as received without further purification.
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9

Synthesis of Metal-Organic Frameworks

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La(NO3)3·6H2O, Co(NO3)2·6H2O, La(CH3COO)3·nH2O, Co(CH3COO)2·4H2O, citric acid, 0.1 M KOH aqueous solution (Wako Pure Chemical Industries, Ltd.), ethanol (Kanto Chemical Co., Inc.), Ketjen black (C-ECP; Lion Specialty Chemicals Co., Ltd.), carbon nanofibers (graphitized, iron-free; Sigma-Aldrich), Vulcan XC-72 (Cabot Co.), activated carbon (Strem Chemicals Inc.), and 5 wt% Nafion perfluorinated resin solution (Sigma-Aldrich) were used as received.
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10

Quantification of Organic Acids in Yam Flour

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The organic acids were determined by HPLC, using the extraction and analysis method, as described previously by Bhandari et al. [1 (link)]. A total of 1 g of yam flour was added to 25 mL of distilled water, and 1 mL of the internal standard (10 g of glutaric acid (Tokyo Kasei Kogyo Co. Ltd., Tokyo, Japan) in 100 mL of water) was added. The mixture was placed in a boiling water bath for 10 min, cooled, and made up to volume in a 100 mL standard flash. A small volume of solution was filtered through a no. 5 A filter paper (Advantec Toyo Roshi Kaisha, Tokyo, Japan), and this solution was then again filtered through a 0.45 µm before separation by HPLC. A 7.8 × 300 mm ion exclusion column (HPX-87H, Bio-Rad, Hercules, CA, USA) was used with 0.0125 M H2SO4 as mobile phase, at a flow rate of 0.5 mL/min, the Diode Array Detector (DAD) operating at 214 nm and column oven temperature was 30 °C. For calibration of the HPLC system, a standard mixture of oxalic acid (0.02 g, Wako Pure Chemical Industries Ltd., Osaka, Japan), citric acid (0.02 g, Wako Pure Chemical Industries Ltd., Osaka, Japan), succinic acid (0.02 g, Wako Pure Chemical Industries Ltd., Osaka, Japan), and glutaric acid (0.08 g, Tokyo Kasei Kogyo Co. Ltd., Tokyo, Japan) in 100 mL of 0.0125 M H2SO4 was used.
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