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Amaxa nucleofector kit

Manufactured by Lonza
Sourced in Germany, United States, Switzerland

The Amaxa Nucleofector Kit is a laboratory equipment product designed for the transfection of cells. It allows for the efficient delivery of nucleic acids, such as DNA or RNA, into a variety of cell types.

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71 protocols using amaxa nucleofector kit

1

Cell Culture and Transfection Protocols

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HEK293T and HeLa cells were obtained from ATCC, and C57BL/6 mouse iBMDM cells were provided by J. Kagan (Boston Children’s Hospital). Cells were cultured in DMEM (Invitrogen) with 10% heat- inactivated foetal bovine serum, supplemented with 100 U ml−1 penicillin G, 100 μgml−1 streptomycin sulphate, 6 mM HEPES, 1.6 mM L-glutamine, and 50 μM 2-mercaptoethanol (2ME). There were no antibiotics in the cell culture medium used for bacterial infection and for experiments in which culture supernatants were collected for bacterial incubation. Cells were verified to be free of mycoplasma contamination. Transient transfection of HEK293T and HeLa cells was performed using the calcium phosphate method or Lipofectamine 2000 (Invitrogen) according to the manufacturer’s instructions. iBMDM cells were transfected by nucleofection (Amaxa) using the Amaxa Nucleofector kit (VPA-1009). Bacterial strains were obtained from ATCC (E. coli strain BL21, S. aureus strain CA-MRSA USA300 and L. monocytogenes 10403S strain) and grown in Luria broth (LB), tryptic soy broth and brain–heart infusion media, respectively.
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2

Efficient PKD1 Protein Suppression in N27 Cells

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Predesigned PKD1-siRNA was purchased from IDT, Inc. PKD1-siRNA effectively suppressed >80% of PKD1 protein expression levels after a 36 h post-transfection. N27 cells (50–70% confluence) were transfected with siRNA duplexes using an Amaxa Nucleofector kit (Amaxa), as described in our previous study [39] (link), [43] (link).
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3

Gene Silencing and Overexpression of FXR1 in VSMCs

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Gene silencing was performed using ON-TARGET plus SMARTpool FXR1 siRNA, which contains a mixture of four siRNAs which target human FXR1 (10 nM) purchased from Dharmacon, Inc. (Lafayette, Co, USA) as we have described.16 (link),54 (link),57 (link) Scrambled control siRNA was also purchased from Dharmacon, Inc. Transfection of VSMC was performed using the AMAXA Nucleofector Kit (Amaxa, Inc., Gaithersburg, MD, USA) following the manufacturer’s instructions as we described.16 (link),49 (link),54 (link) For overexpression studies, adenovirus vector encoding human FXR1 cDNA (AdFXR1) and control GFP was purchased from Vigene Biosciences (Rockville, MD, USA). The AdenoFXR1 and control virus AdenoGFP were used at 100 MOI in the transduction of hVSMCs. Forty-eight hours after infections, VSMC were serum starved 24 h, then treated as described in the legend.
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4

Differentiation of HL-60 cells into neutrophils

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HL‐60 cells were purchased from the American Type Culture Collection (ATCC; Manassas, VA) and were maintained in RPMI 1640 medium supplemented with 10% fetal bovine serum (FBS) and penicillin/streptomycin at 37°C in 5% CO2. HL‐60 cells in this study were regarded as a model of AML, not acute promyelocytic leukemia (APL), because these cells were negative for promyelocytic leukemia/retinoic acid receptor alpha (PML‐RARA). HL‐60 cells were differentiated into neutrophilic lineage cells (DHL‐60) by culture in medium containing 1.3% DMSO for the indicated times. In some experiments, cells were transfected with control or Kras siRNA using an Amaxa Nucleofector Kit (Amaxa Biosystems, RONZA, Japan) according to the manufacturer's protocol, followed by further culture for 96 hours in RPMI 1640 medium supplemented with 20% FBS plus 1.3% DMSO.
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5

Monocyte-Endothelial Crosstalk via HSP70 and Cx43

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Human microvascular endothelial cells (HMEC; Lonza; Basel, Switzerland) were grown in DMEM plus 10% FCS (5% CO2; 37°C). Human peripheral blood monocytes were isolated from buffy coats of healthy donors by Ficoll gradient (MACS system, Miltenyi Biotec Inc., Paris, Fr). CD14 monocytes isolated beads were plated in RPMI1640 plus 10% FCS and stimulated overnight by 100 ng/mL recombinant human macrophage colony-stimulating factor (M-CSF; Millipore, Molsheim, Fr). Untouched monocytes were nucleoporated with siRNA using Amaxa nucleofector kit (Amaxa; Koln, Germany) and HMEC were transfected by lipofectamine RNAiMAX (Invitrogen; Life Technologies, Saint-Aubin, Fr). siRNA HSP70 was purchased from Sigma-Aldrich (SASI_Hs01_00051449; Saint-Quentin Fallavier, Fr), siRNA Cx43 was from Santa Cruz Biotech (GJA1_human mapping 6q22.31; Clinisciences; Nanterre, Fr) and control siRNA was from Dharmacon (Fermentas; ThermoFischer, Saint-Remy-les-Chevreuses, Fr). Cells were incubated overnight in FCS-free media before use.
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6

Gene Silencing and miRNA Overexpression in VSMCs

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Gene silencing was performed using ON-TARGET plus SMARTpool LDLRAP1 siRNA, which contains a mixture of four siRNAs which target human LDLRAP1 (10 nM) purchased from Dharmacon, Inc. as we have described [14 (link)]. miR133a and miR133a anti-mer was purchased from Dharmacon, Inc. Transfection of VSMC was performed using the AMAXA Nucleofector™ Kit (Amaxa, Inc.) following the manufacturer’s instructions as we described [14 (link)]. The miR133a adenovirus was constructed using the Invitrogen Blocki-PolII miR RNAi expression system using oligonucleotides representing the miR133a sequence: top 5′ TGCTACAATGCTTTGCTAGAGCTGGTAAAATGGAACCAAATCGCCTCTTCAATGGATTTGGTCC CCTTCAACCAGCTGTAGCTATGCATTGA; bottom 5′-CCTGTCAATGCATAGCTACAGCTGGTTGAAGGGGACCAAATCCATTGAAGAGGCGATTTGGTT CCATTTTACCAGCTCTAGCAAAGCATTGT. Scrambled control adenovirus is a control provided by Invitrogen. Both were used at 4MOI.
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7

Silencing MOR Receptor in THP-1 Cells

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MOR-specific siRNA was purchased from Qiagen (Hs_OPRM1_7 FlexiTube siRNA). THP-1 cells were transfected with 1 μM of siRNA using the Amaxa nucleofector kit V following the manufacturer’s instructions. Control cells were mock transfected in parallel (“mock” control). After nucleofection, THP-1 cells were resuspended in complete RPMI medium (5. 105 cells/ml), treated with PMA for 24 h and infected with stationary phase L. donovani 1S2D promastigotes as described above. Parasite infectivity was assessed 48 h after infection. Down-regulation of MOR mRNA level was analysed 24 h after nucleofection and 48 h after infection by qRT PCR as described below using the following primer sets: MOR fwd: 5’ GGTACTGGGAAAACCTGCTGAAGATCT, rev: 5’ GGTCTCTAGTGTTCTGACGAATTCGAGTGG and 18S rRNA: Fwd 5' ACCGATTGGATGGTTTAGTGAG, Rev 5' CCTACGGAAACCTTGTTACGAC. The relative expression level of MOR was determined based on the Ct value normalized to the Ct value of the reference 18S rRNA. siRNA treated cells were compared to the mock transfected cells.
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8

Measuring KSHV-Induced Cell Death

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siRNAs specifically targeting ACOX1 (pre-validated) were purchased from Santa Cruz Biotechnology (Cat. Sc-94104). A negative-control siRNA (siSCRB) and ABCD3 (pre-validated) were designed and synthesized by Ambion. TIME cells were transfected with siRNA using the Amaxa Nucleofector Kit by Lonza per the manufacturer’s protocol. At 24 hour post transfection, cells were Mock- or KSHV-infected. At 96 hpi cell death was measured using Trypan blue assay and cell were quantified using TC20 cell counter from BioRad. In parallel, cell death fluorescent images were acquired using the IncuCyte from Essen Bioscience using YOYO-1 or SytoGreen (both probes from Thermofisher scientific).
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9

Correlative Light and Electron Microscopy of Neuronal Synapses

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Plasmids encoding SNAP-CLC were electroporated into dissected neuronal suspensions using an Amaxa Nucleofector Kit (Lonza) at DIV0 before plating on 35-mm gridded, glass-bottom MatTek dishes (part no. P35G-1.5-14-CGRD). At DIV14, neurons were stained with 0.5 μM Janelia Fluor 549 at 37 °C for 1 h, followed by incubation in original culture medium at 37 °C for 2 h before fixation for immunofluorescence or CLEM. Labeled neurons were imaged and their coordinates on the MatTek dishes recorded using fluorescence microscopy and bright-field differential interference contrast microscopy, respectively. Then neurons were fixed with 2.5% glutaraldehyde in 0.1 M sodium cacodylate buffer, postfixed in 0.1 M sodium cacodylate buffer containing 1% OsO4 and 1.5% K4Fe(CN)6 (Sigma-Aldrich), en bloc stained with 2% aqueous uranyl acetate, dehydrated, and embedded in Embed 812. The nerve terminals expressing SNAP-CLC were relocated (based on the prerecorded coordinates), sectioned, and imaged. Ultrathin sections (60 to 80 nm) were observed with a Philips CM10 microscope at 80 kV, and images were obtained with the iTEM soft imaging system and a Morada 1k × 1k CCD camera (Olympus). Except when noted otherwise, all reagents for EM were obtained from EMS.
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10

FRET Imaging of Rac1 Activation

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Tet-Plk4–expressing HUVECs were electroporated with a dual-chain Rac1 FRET biosensor (gift of Klaus Hahn, University of North Carolina at Chapel Hill; Kraynov et al., 2000 (link)) and centrin::tdTomato, using an Amaxa Nucleofector Kit (VPB-1492; Lonza) and then plated on fibronectin-coated (5 μg/ml) glass-bottom dishes. ECs were fixed (4% PFA) after overnight incubation with DOX to induce centrosome overamplification. For FRET imaging, a 453-nm laser was used for excitation, and both CFP (470/24 nm) and FRET/yellow fluorescent protein (535/40 nm) emission channels were collected with an Olympus 60×/NA 1.4 objective on an Olympus FV1200 confocal microscope. All images were acquired using the same parameters, optimized to reduce photobleaching. FRET images were processed as described previously (Kardash et al., 2011 (link)). Briefly, the acquired CFP/FRET ratios were corrected for background in ImageJ. Single-cell images were segmented in each channel in ImageJ using the minimum and mean threshold method, and regions of interest were analyzed. FRET ratio images were produced by dividing the processed FRET image by the CFP image. Individual cell mean FRET/CFP values corresponding to Rac1 activation were obtained by calculating the mean pixel value of the FRET ratio image for each single cell.
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