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32 protocols using anti cd45ra fitc

1

Comprehensive Immunophenotyping of Immune Cells

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The following fluorochrome-labeled monoclonal antibodies (mAb) against human molecules were used: APC-anti-CD3 (SK7), PerCP/Cy5.5-anti-CD4 (SK3), APC-H7-anti-CD8 (SK1), PE-anti-HLA-DR (TU36), PE-Cy7-anti-CD19 (SJ25C1), FITC-anti-CD45RA (L48), Brilliant Violet 421-anti-CD27 (M-T271), PE-anti-CD25 (2A3), Alexa 488-anti-FOXP3 (259D/C7), Pacific Blue-anti-CD4 (RPA-T4), PE-Cy5-anti-CD21 (B-ly4), FITC-anti-IgD (IA6-2), APC-anti-IgM (G20-127), APC-H7-anti-CD38 (HB7), PE-anti-CD24 (ML5) from BD; APC-anti-CXCR5 (J252D4), PE-Cy7-anti-CD45RA (HI100), Pacific Blue-anti-CXCR3 (G025H7), and Brilliant Violet-anti-CCR6 (G034E3) from BioLegend.
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2

Isolation and Phenotyping of Splenic Lymphocytes

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Spleen tissue was washed with 5 mL RPMI-1640 medium (Gibco, Grand Island, USA) and then minced with two sterilized glass slides, passed through a 70-μm nylon cell strainer, and washed. The suspension was differentially centrifuged over a Percoll gradient (EMB Biosciences, La Jolla, CA) (40% Percoll, 1200 r/min, 10 min, 25°C). The lymphocytes were washed with phosphate-buffered saline (PBS), and then suspended in RPMI-1640 medium, and 106 single cell suspensions were prepared.
Whole blood (100 μL) and splenic lymphocytes (106) were triple-stained with (1) APC-anti-CD3, FITC-anti-CD45RA and PE-anti-CD161a, or (2) APC-anti-CD3, PE-anti-CD4 and FITC-anti-CD8a (all from BD Biosciences, San Jose, CA, USA) for 30 min at 4°C in the dark, then washed with PBS and resuspended in FACS staining buffer (BD Biosciences). Three-color analysis was performed on a FACSCalibur (BD Biosciences) with a 100,000–200,000 event count. Data were analyzed using FlowJo software (TreeStar, San Carlos, CA, USA).
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3

Immunophenotyping of Human CD34+ Cells

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Human CD34+ cells with or without editing were were first stained with fixable viability stain 660 (1:1000, BD) for 5 min in 37°C and then were stained with Percp-Cy5.5-anti-CD34 (1:50), PE-Cy7-anti-CD38 (1:50), PE-anti-CD90 (1:30), FITC-anti-CD45RA (1:25), and BV421-anti-CD49f (1:30) (all of the antibodies are from BD) for 30 min in 4°C. Samples were then sorted on Aria Fusion Cell Sorter (BD) or analyzed on LSR Fortessa cytometer (BD).
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4

Isolation and Characterization of Th1/2/17 Cells

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Peripheral blood mononuclear cells (PBMCs) were isolated from blood samples using Ficoll-Hypaque (GE Healthcare, USA) gradient centrifugation. To obtain Th1/2/17 cells, PBMCs were incubated for 30 min in with specific antibodies (FITC-anti-CD45RA, PE-anti-CCR6, Percep-anti-CD3, PE/Cy7-anti-CD4, APC-anti-CXCR3, BV421-anti-CXCR5, BV510-anti-CCR4; all from BD Biosciences) in PBS containing 2% fetal bovine serum. Cells were examined immediately using a BD FACS-CantoII, and data were analyzed using FlowJo software (TreeStar, USA). Cells were classified as follows: Th17 cells, CD3+CD4+CD45RA-CXCR5-CCR6+CCR4+; Th2 cells, CD3+CD4+CD45RA-CXCR5-CCR6-CCR4+CXCR3-; and TH1 cells, CD3+CD4+CD45RA-CXCR5-CCR6-CCR4-CXCR3+.
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5

Multi-Parameter Flow Cytometry and Immunohistochemistry

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Anti‐human mAbs including APC‐anti‐CD3 (UCHT1), FITC‐anti‐CD3 (UCHT1), APC‐Cy7‐anti‐CD4 (RPA‐T4), PE‐anti‐CD8 (SK1), APC‐anti‐CD8 (SK1), PE‐Cy7‐anti‐CD38 (HIT2), PE‐anti‐PD‐1 (EH12.1), PerCP‐Cy5.5‐anti‐CXCR5 (RF8B2), PE‐anti‐CD27 (M‐T271), FITC‐anti‐CD27 (M‐T271), FITC‐anti‐CD45RA (HI100), APC‐anti‐CCR6 (11A9), PE‐Cy7‐anti‐CXCR3 (1C6), and APC‐Cy7‐anti‐CD19 (SJ25C1) (BD Biosciences) and anti‐mouse mAbs including PE‐Cy7‐anti‐CD3 (145‐2C11), PerCP‐Cy5.5‐anti‐CD4 (RM4‐5), PE‐anti‐B220 (RA3‐682), PE‐anti‐Bcl‐6 (K112‐91), PE‐anti‐T‐bet (4B10), PE‐anti‐GATA3 (L50‐823), PE‐anti‐RORγt (Q31‐378) (BD Bioscience), APC‐anti‐PD‐1 (29.F1A12), FITC‐anti‐CXCR5 (L138D7), and Pacific Blue‐anti‐CD45.2 (104) (Biolegend) were used for flow cytometry. For immunohistochemistry, we used anti‐human Abs including Alexa Fluor 647‐anti‐CD4 (MT310), mouse anti‐Bcl6 (P1F6; Nichirei, Tokyo, Japan), and rabbit anti‐Bob1 pAb (C‐20; Santa Cruz Biotechnology) for staining of human tonsils and we used hamster anti‐mouse CD3 (500A2; Life Technologies) and biotin‐PNA visualized by streptavidin‐PE (Vector Laboratory) for staining of mouse spleens.
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6

Comprehensive Flow Cytometry Immunophenotyping

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Multi-parameter cytofluorometric analysis was performed to phenotype PBLs. The following conjugated monoclonal antibodies were purchased from BD Biosciences: peridinin chlorophyll protein complex–cyanine (PerCP-5–5)-anti-CD3, fluorescein isothiocyanate (FITC)-anti-CD4, allophycocyanin–cyanine (APC-Cy7)-anti-CD8, phycoerythrin–cyanine (PE-Cy7)-anti-CD25, PE–anti-FOXP3, PE-anti-CD45RO, FITC-anti-CD45RA, allophycocyanin (APC)-anti-CD45RA, and FITC-anti-Ki67. Cryopreserved cells were resuspended in a staining buffer supplied by the manufacturer (BD Biosciences, San Jose, CA) and stained for 20 min at 4 °C. The expression of FOXP3 was detected by intracellular staining of cells pre-stained with other markers and cell permeabilization was performed according to the manufacturer’s instructions (BD Biosciences). Samples were run on a FACSCanto flow cytometer (Becton Dickinson) with at least 5 × 104 events acquired per parameter. Sequential gating was used to discriminate lymphocyte subsets, as previously described.42 (link) Flow cytometry data were analyzed using the FloJo software package (Treestar).
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7

Multiparametric Analysis of PBMCs

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Total PBMCs cells were stained with Pacific Blue anti-CD3 (BD 558117, clone UCHT1), PerCP-anti-CD4 (BD 566924, clone SK3), APC-Cy7-anti-CD8 (BD 557834, clone SK1), FITC-anti-CD45RA (BD 555488, clone HI100), and PE-anti-CD45RO (BD 555493, clone UCHL1) antibodies or APC-Cy7-anti-CD19 (BioLegend 302218, clone HIB19), Pacific Blue-anti-CD27 (BioLegend 356414, clone M-T271), FITC-anti-IgD (Life Technology H15501), and PerCP-anti-CD3 (BioLegend 300326, clone HIT3a). After 30 minutes of incubation, cells were washed, fixed, and permeabilized using the Foxp3/transcription factor staining buffer set (Thermo Fisher Scientific) according to the manufacturer’s instruction. Cells were then intracellularly stained with an Alexa Fluor 647-anti-AIOLOS antibody (BD 565215, clone S50-895) for an hour. Cells were acquired and analyzed by flow cytometry (Becton Dickinson FACSCanto II) and FlowJo software (FlowJo 10.8.2, TreeStar), respectively.
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8

Phenotypic Analysis of Regulatory T Cells

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Human peripheral blood mononuclear cells (PBMCs) were isolated from freshly drawn venous blood and BM mononuclear cells (BMMCs) were obtained from BM in both of OA and RA patients by Ficoll-Paque PLUS (GE Healthcare Biosciences AB, Uppsala, Sweden) density centrifugation. To examine the phenotype of regulatory T cells (Tregs), the following antibodies were used: anti-CD4-PerCP, anti-CD25-FITC, anti-CD127-PE, anti-CD45RA-FITC, anti-CD45RO-PE and anti-CD184 (CXCR4)-PE (all from BD Biosciences, San Jose, CA, USA). Next, cells were fixed and permeabilized using the Foxp3 Staining Buffer Set followed by intracellular staining with anti-Foxp3-APC antibody (PCH101; eBioscience, San Diego, CA, USA). Cells were acquired using FACSCalibur (BD Biosciences), and the results were analyzed using CellQuest (BD Biosciences) software. The gating strategy was based on the identification of lymphocytes according to FSC and SSC signal distribution. Then, CD4+ lymphocytes were gated, and next, appropriate cell populations were identified. Gates were settled according to the isotype control or fluorescence minus one (FMO) for the desired marker. The dot plots shown are representative for at least six experiments done on different patients. The described gating strategy is shown in Figure 2b and was used though all the analysis of the cell phenotype presented in this paper.
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9

Comprehensive Immune Cell Profiling

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Anti-CD4-APC Cy7, anti-IFNγ–PE Cy7, anti-CCR5-pacific blue and anti-CCR6-Alexa Fluor 488 were purchased from Biolegend (CA). Anti-IL-1R1-PE, anti-IL-6R-PerCP, anti-CCR9-PE, anti-CXCR3-FITC, anti-IL-23p19 and control IgG were from R&D Systems (MN). Neutralizing anti-IL-1β and anti-IL-6/IL-6R were made in house. Anti-CD45RA-FITC, anti-CD45RO-PE, anti-integrin β7-PE, and anti-CD161-PE were purchased from BD Biosciences. Anti-IL-17-APC (eBioscience, CA) and anti-human IgG-PE (Jackson ImmunoResearch Laboratories, PA) were used. GolgiPlug was purchased from BD Pharmingen (CA). CFSE (Molecular probes, Oregon) was used for measuring CD4+ T cell proliferation. TLR ligands, including Pam(3)CysSK(4) were purchased from Invivogen (Oregon). Jak2 inhibitor (1,2,3,4,5,6-Hexabromocyclohexane), Jak3 inhibitor (4-(4′-Hydroxyphenyl)amino-6,7-dimethoxyquinazoline), pan Jak inhibitor (2-(1,1-Dimethylethyl)-9-fluoro-3,6-dihydro-7H-benz[h]-imidaz[4,5-f]isoquinolin-7-one), STAT5 inhibitor (Pimozide) and IRAK-1/4 inhibitor (N-(2-Morpholinylethyl)-2-(3-nitrobenzoylamido)-benzimidazole) were purchased from EMD chemicals (PA). STAT3 inhibitor (Stattic) was from Sigma-Aldrich (MO). MyD88 homodimerization inhibitory peptide (Imgenex, CA) was used. Anti-CD3/CD28 microbeads were purchased from Miltenyi Biotec (Germany).
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10

HLA-Restricted T-Cell Identification

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PBMCs and spleen MNCs from HLA-A*02:01+/B*27:05+ and HLA-A*02:01+/B*27:05- individuals were tetramer-stained for 1 hour at room temperature before undergoing dual tetramer-associated magnetic enrichment (TAME), as described [32 (link)], using the MACS PE- and APC-MicroBeads and LS columns (Milteny Biotec, Bergisch Galdbach Germany). Lymphocytes were surfaced stained with the above surface antibodies plus anti-CCR7 PECy7 (BD Pharmingen #557648) and anti-CD45RA FITC (BD Pharmingen #555488). Samples were acquired on a BD Fortessa or BD FACS Aria III for single-cell sorting and subsequent multiplex-nested RT-PCR for TCR analyses of paired CDR3α and CDR3β regions [32 (link)].
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