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Trans blot sd semi dry transfer cell

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The Trans-Blot SD Semi-Dry Transfer Cell is a laboratory device used for the transfer of proteins or nucleic acids from electrophoresis gels to membrane supports for further analysis. It operates on a semi-dry principle to facilitate efficient and consistent protein or nucleic acid transfer.

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312 protocols using trans blot sd semi dry transfer cell

1

Western Blot Analysis of HA and Myc Tagged Proteins

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4xSDS sample buffer was used to prepare SDS-PAGE samples. Protein samples were separated by a 4-20% Mini-PROTEAN Precast Protein Gel (4561096, BIO-RAD) and transferred on an Immun-Blot PVDF membrane (162-0177, BIO-RAD) using a Trans-Blot SD Semi-Dry Transfer Cell (1703940, BIO-RAD). The PVDF membrane was blocked for 30 minutes at RT using 5% Blotting-Grade Blocker (170-6404, BIO-RAD)/Tris buffered saline with Tween 20 (TBST) before primary antibody incubation at 4°C overnight. Mouse anti-HA (1:1,000, 16B12, MMS-101P, BioLegend) and mouse anti-Myc (1:1,000, 9E10, 13-2500, Thermo Fisher Scientific) were used as primary antibodies. After three TBST washes at RT for 20 minutes, the membrane was incubated with HRP-conjugated anti-mouse IgG (H+L) secondary antibody (1:10,000, 115-035-003, Jackson ImmunoResearch) at RT for 1 hour. Both primary and secondary antibodies were diluted in 5% Blotting-Grade Blocker/TBST. HA and Myc tagged proteins were visualized on an Amersham Hyperfilm MP (28906845, Cytiva) using SuperSignal WestDuo (34075, Thermo Fisher Scientific).
• 4xSDS sample buffer: 200 mM Tris-HCl (pH 6.8), 8% SDS, 100 mM DTT, 40% glycerol and 0.04% BPB • TBST: 25 mM Tris-HCl (pH 7.4), 150 mM NaCl, 2 mM KCl and 0.1% Tween-20
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2

Western Blot Analysis of Protein Lysates

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Cells were washed in ice-cold PBS with Ca2+/Mg2+ and lysed in ice-cold RIPA lysis buffer containing Phosphatase Inhibitor Cocktails 2 and 3 and Protease Inhibitor Cocktail (Sigma-Aldrich). After centrifugation at 13′000 g for 10 min at 4°C, supernatants were collected and protein concentration was measured using Bradford assay kit (Bio-Rad) or BCA assay (Fisher Scientific) for Rho-pulldown samples. The samples were mixed with NuPAGE LDS sample buffer and reducing agent (Invitrogen) and heated at 70°C for 10 min 10 μg total protein was loaded onto a 4–12% NuPAGE BT gradient gel (Invitrogen), resolved by SDS-PAGE, and transferred to a 0.45 μm polyvinylidene fluoride membrane in NuPAGE Transfer Buffer at 20V for 1h using a Trans-Blot SD Semi-Dry Transfer Cell (Bio-Rad). The membrane was blocked for 30 min with 5% BSA in PBS buffer containing 0.1% Tween 20 (Sigma-Aldrich), incubated with primary antibodies in PBS/Tween 20 overnight at 4°C, washed in PBS/Tween 20, incubated with appropriate HRP-conjugated secondary antibodies for 1 h, and developed with Super-Signal West Pico PLUS Chemiluminescent Substrate (Thermo Fisher Scientific).
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3

Detecting Affinity-Tagged Proteins by Western Blot

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Western blot was used to specifically detect affinity-tags or test functionality of immune serum raised against the recombinantly produced proteins. After SDS-PAGE and equilibration in Semi dry blotting buffer, the gel was placed between soaked Whatman paper onto a methanol activated 0.45 µM PVDF-membrane. After removing air bubbles, proteins were blotted in a Trans Blot® SD semi-dry transfer cell (Bio-Rad) with 2 mA per cm2 for 110 minutes. Subsequently, membranes were blocked with TBS-T supplemented with 5% (w/v) skimmed milk powder for 1 hour, washed, primary antibody added in TBS-T supplemented with 1% (w/v) skimmed milk powder and incubated for 1 hour at room temperature or at 4 °C overnight. After washing, a secondary antibody-HRP conjugate was added, incubated for 1 hour at room temperature and washed. Washing in between incubations steps was carried out four times with TBS-T for 10 minutes. For detection, ECL Western Blotting Substrate (Pierce Biotechnology) was prepared according to manufacturer’s instructions and evenly spread onto the membrane. After 1-minute incubation, the signal was detected incrementally by either photographic film or in the ChemoCam ECL Imager (Intas) CCD-imager at incubation times spanning 30 seconds to 10 minutes.
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4

Western Blot Analysis of His-Tagged Proteins

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Samples stored in Laemlli sample buffer containing 5% β-mercaptoethanol were thawed on ice and then incubated at 99 °C for 5 min. Samples (9 μl) were loaded onto an 8–16% Mini-PROTEAN TGX gel (Bio-Rad) and run for 80 min at 90 V, followed by transfer to a polyvinylidene fluoride (PVDF) membrane using a Trans-Blot SD semidry transfer cell (Bio-Rad) at 15 V for 15 min. Blots were blocked using 3% (w v-1) bovine serum albumin (BSA) in PBS containing 0.1% (v v-1) Tween 20 (PBST) for 1 h at room temperature, then incubated overnight at 4 °C with 1 μgml-1 His6 Tag Mouse Monoclonal IgG2b antibody (HIS.H8; MA1-21315, ThermoFisher) diluted in 1% BSA in PBST. Membranes were washed 3 × 10 min in PBST, then incubated for 1 h at room temperature with horse radish peroxidase-conjugated goat antimouse IgG cross-adsorbed secondary antibody (A16072, ThermoFisher) diluted 1:2,500 in 1% BSA in PBST, followed by 3 × 10 min washes in PBST. Protein bands were detected using Clarity Western ECL Substrate (Bio-Rad) and imaged using a FluorChem digital imager (Alpha Innotech).
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5

Western Blot Analysis of Protein Interactions

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After SDS-PAGE, the proteins in the gel were transferred onto a membrane (Immobilon P, IPVH00010, Merck Millipore) using a Trans-Blot SD Semi-Dry Transfer Cell (Bio-Rad). The membrane was blocked with 5% skim milk in PBS, supplemented with 0.05% Tween 20 (PBS-T). The membranes were incubated with the primary antibody: mouse anti-GAS7 (clone 2F6, TA501756, OriGene), anti-Grb2 (Sc-8034, OriGene), anti-Nck (SC-20026, Santa Cruz Biotechnology), anti–N-WASP (#4848, Cell Signaling Technology), anti-WASP (#48606, Cell Signaling Technology), anti-SPIN90 (Ab88467, Abcam), anti-mCherry (71615, Cell Signaling Technology), and anti–glyceraldehyde-3-phosphate dehydrogenase (SC16657, Santa Cruz Biotechnology) at a 1:10,000 dilution, followed by an anti-mouse or anti-rabbit IgG alkaline phosphatase conjugate (Promega) secondary antibody in PBS-T at a 1:10,000 dilution. The alkaline phosphatase was detected by 5-bromo-4-chloro-3-indolyl phosphate/nitro blue tetrazolium (Roche).
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6

Western Blot Immunodetection of SEPT4_Tsm

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After electrophoretic separation of the proteins, the gels were electrotransferred to polyvinylidene fluoride membranes (Millipore) using a Trans-Blot SD Semi-Dry transfer Cell (Bio-Rad) at 15 V for 35 min. Prior to transfer, the membranes were processed as indicated by the manufacturer. After transferring the proteins, the membranes were blocked for 1 h at room temperature in the presence of 2% bovine serum albumin in PBS mixed with 0.15% Tween20. Polyclonal antibodies against SEPT4_Tsm (1:5,000) were reacted against total protein extracts of the T. crassiceps ORF strain and of T. solium cysticerci. Commercial secondary goat anti-rabbit IgG (H + L) antibody conjugated to horseradish peroxidase (HRP) (1:2,000, 81-6520; Zymed, South San Francisco, CA, USA) and goat anti-mouse IgG (H + L) antibody conjugated to HRP (1:1,000, 81-6520; Zymed) were used to detect binding. Antigen-antibody interactions were revealed by adding a chemiluminescence developmental kit solution (SuperSignal West Pico Chemiluminescent Substrate, Thermo-Fisher Scientific). Membranes were imaged using a ChemiDoc XRS system (Bio-Rad).
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7

Western Blot Analysis of Protein Expression

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The cells and tissue sections were solubilized with CytoBuster™ Protein Extraction Reagent (Millipore, Billerica, MA, USA). Equal amounts of protein from whole cell lysates were resolved by SDS-PAGE. The proteins were then transferred to polyvinylidene difluoride membranes (Millipore) using the semi-dry system [Trans-Blot SD Semi-Dry Transfer Cell (Bio-Rad Laboratories, Hercules, CA, USA)]. Primary antibodies were as follows: anti-mouse bactin (Abcam, Cambridge, UK) and anti-mouse CfB (Sigma Aldrich).
After incubation with secondary antibodies (HRP-conjugated antirabbit and anti-mouse, Cell Signaling Technology, Inc.), immunoreactive proteins were visualized using enhanced chemiluminescence (Chemi-Lumi One Super, Nacalai Tesque), and signals were analyzed using Image Quant LAS4000 (GE Healthcare, Chalfont, UK).
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8

Western Blot Analysis of RPE65 Protein

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Cells and tissues were homogenized on ice in RIPA buffer (140 mM NaCl, 1 mM EDTA, 10 mM Tris HC1 pH 8.0, 0.1% Sodium Deoxycholate, 1mM PMSF, 1% Triton X-100 and cOmplete™, EDTA-free Protease Inhibitor Cocktail). Bradford assay (Thermo Fisher Scientific) was carried out, and 20 μg protein was resolved by 4-15% Mini-PROTEAN® TGX Precast Protein Gel. Transfer to a 0.45-μm nitrocellulose membrane was done using a Trans-Blot SD semidry transfer cell (Bio-Rad) at 20 V for 1 h. Membranes were subsequently washed in TBS with 0.1% Tween-20 and then blocked using 5% Blotting-Grade Blocker (Bio-Rad) containing 0.1% Tween-20 for 1 h. Primary antibodies were diluted in the 10% blocking buffer, and the membranes were incubated overnight at 4 °C. The antibodies used and their dilutions were as follows: 1:1000 dilution of anti-RPE65 antibody (Proteintech®), and 1:1000 dilution of anti-β-actin (A2066, Sigma-Aldrich). Proteins were visualized using Amersham ECL Prime Western Blotting Detection Reagent on an iBright™ CL750 Imaging System following incubation with HRP-conjugated secondary antibodies at 1:500 dilutions for 1 h at room temperature (Shyam et al., 2017 (link))
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9

Validation of ar1b Gene Expression

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To make sure the ar1b inserted into the HearNPV genome was active, both reverse transcription PCR (RT-PCR) and western blot analysis were used to detect expression of ar1b. The total RNA was extracted from Ar1b-HearNPV infected HzAM1 cells (2 × 106) with RNAiso plus (TAKARA) according to the manufacturer’s protocol. Briefly, the cDNA was synthesized using 1.0 μg of total RNA (as template) with the reverse transcriptase M-MLV (Thermo Fisher Scientific, USA) and an oligo(dT) anchor primer. Primers qβ-actin-F and qβ-actin-R (Table 1) were used to detect the β-actin transcription; this was selected as a reference gene. The ar1b transcription level was monitored by primer pairs qAr1b-F and qAr1b-R (Table 1).
Ar1b-HearNPV-infected HzAM1 cells were used to extract the total protein according to the manufacturer’s guidelines [29 ]. Protein samples were then separated by SDS-PAGE (15%) and electro-transferred by Trans-Blot SD semi-dry transfer cell (BIO-RAD) to the nitrocellulose membrane. Immunoblotting was performed by using standard protocols. The primary antibodies used included a monoclonal anti-actin antibody (1:10000) and a monoclonal anti-HA (1:4000), following the secondary antibodies HRP-conjugated goat anti-mouse lgG (1:5000). The proteins were visualized with an enhanced chemi-luminescence system (ECL; GE).
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10

Western Blot Analysis of GPR151 Protein

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Lysate aliquots containing 50 μg of proteins were denatured, separated on a 4–10% SDS-polyacrylamide gel, and transferred to nitrocellulose membranes using a Trans-Blot® SD Semi-Dry Transfer Cell (Bio-Rad). Membranes were blocked in 5% non-fat milk and incubated overnight at 4 °C with primary antibodies: anti-GPR151 (LSBio # LS-B6760-50, 1:500 dilution) or anti-beta-actin (Cell Signaling #3700, 1:1000 dilution). Subsequently, the membranes were incubated for 1 h at room temperature with IRDye® 800CW goat-anti-mouse antibody (LI-COR #926-32210, 1:2500 dilution). Target proteins were visualized using Odyssey® Fc Imaging System (LI-COR). Uncropped blots were provided in the Source Data.
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