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7 protocols using cd62l microbeads

1

Purification and Differentiation of T Cell Subsets

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CD4+ T cells were purified from spleens by magnetic‐activated cell sorting (Dynal CD4+ T cell negative isolation kit, Invitrogen, Gent, Belgium) according to the manufacturer's protocol. Naive or memory T cells were purified from previously isolated CD4+ T cells subsets by positive or negative selection of CD62L‐expressing cells using the magnetic cell sorting kit (CD62L microbeads, Miltenyi Biotec, Bergisch Gladbach, Germany) according to the manufacturer's protocol. For Treg differentiation experiments, CD25‐positive cells were removed from purified CD4+ T cells by magnetic‐activated cell sorting using FITC‐conjugated anti‐CD25 antibodies and anti‐FITC microbeads (Miltenyi Biotec).
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2

Isolation and Expansion of CD8+ Central Memory T Cells

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CD8+CD45RO+CD62L+ central memory T cells (TCM) were isolated from peripheral blood mononuclear cells (PBMCs) of healthy donors (Puget Sound Blood Center, Seattle, WA) by negative selection using CD8 isolation kits and CD45RA microbeads and positive selection with CD62L microbeads (Miltenyi Biotec). Following isolation, CD8+ TCM were stimulated with anti CD3/CD28 Dynabeads (Life Technologies) and transduced at a multiplicity of infection (MOI) of 3 on the third day of culture. EGFRt+ TCM subsets were enriched by immunomagnetic selection using biotinylated Erbitux and anti-biotin microbeads (Miltenyi Biotec), then expanded as previously described [44 (link)]. CD8+ TCM were maintained in RPMI medium supplemented with 10% fetal bovine serum, 2 mM L-glutamine, 50 IU/mL recombinant human interleukin 2 (IL-2) and 1 ng/mL recombinant human interleukin 15 (IL-15).
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T Cell Polarization and Checkpoint Regulation

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Naïve CD4+CD25negCD62L+ T cells were isolated using CD4+ T cell isolation kit II (negative selection), CD25 microbead kit (negative selection), and CD62L microbeads (all from Miltenyi Biotec, Auburn, CA). Isolated CD4+CD25negCD62L+ T cells were plated in flasks coated with αCD3 (5 μg/ml) in the presence of αCD28 (5 μg/ml) and Th1-(10 ng/ml IL-12, 1 μg/ml αIL-4), Th2- (10 ng/ml IL-4, μg/ml αIFNγ), or Th17- (20 ng/ml IL-6, 5 ng/ml TGFβ1, 10 ng/ml IL-23, 1 μg/ml αIL-4, 1 μg/ml αIFNγ) skewing cytokines. Cells were cultured for 5 days. Cultures were skewed or stimulated in the presence of either plate bound IgG-Fc (5 μg/ml), or plate bound PD-L1-Ig (R&D Systems, Minneapolis, MN). Cells were rested overnight in the absence of stimulation, and then restimulated on plates coated with various concentrations of αCD3, IgG-Fc and PD-L1-Ig. Cytokine production was assessed by ELISA using eBioscience mAbs.
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4

OT-II T Cell Expansion Assay

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Splenic CD4+ T cells derived from OT-II TCR-Tg mice were enriched with Biotin-labeled antibody cocktail (B220, CD8a, CD11b, CD11c, CD19, CD25, NK1.1, and TER-119) with Streptavidin Microbeads (Miltenyi Biotec). CD4+ T cells were further incubated with CD62L Microbeads (Miltenyi Biotec) to enrich CD62L+CD4+ T cells. These CD62L+CD4+ cells were labeled with 1 μM Cell Trace Violet (Invitrogen) and co-cultured with B cells in the presence of 0.08 and 0.24 μg/ml OVA323–339-peptide (MBL) for 3 days.
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5

Naïve T cell differentiation assay

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CD4+CD62L+ naïve T cells were isolated using CD4 negative enrichment kits (Stemcell Technologies, Vancouver, Canada) and CD62L microbeads (Miltenyi Biotec, San Diego, CA) and confirmed to be >95% pure by flow cytometry. These were cultured on 96-well plates pre-coated with anti-CD3 and anti-CD28 under conditions outlined in Supplementary file 2. In particular, the addition of harmine to Treglow conditions is abbreviated as TregHAR. Compounds were pinned using a CyBIO CyBi Well Vario (96-well pintool) (Cybio, Jena, Germany). Treg and Th1 cultures were fed with equal volume of IL-2-supplemented media (10 ng/ml) and retreated with compound at day 2, split 1:2 into IL-2-supplemented media at day 3 and analyzed at day 4. Th17 and Th0 cultures were treated similarly except no IL-2 was supplemented. Cell proliferation was monitored using CFSE (Life Technologies, Carlsbad, CA) per manufacturer's instructions.
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6

Isolation and Characterization of Antigen-Specific Memory CD4+ T Cells

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To analyze mouse primary CD4+ T cells, naive (CD62LhiCD44lo) or memory (CD62LloCD44hiCD25) phenotype CD4+ T cells were prepared from spleen via MACS (CD4+ T cell isolation kit II and CD62L microbeads [Miltenyi]) and/or flow cytometric cell sorting. To generate OVA-specific memory CD4+ T cells, CD4+ T cells from OVA-specific OT-II TCR Tg mice were utilized. Naive WT or Trp53−/− OT-II CD4+ T cells (CD45.2) were purified and 5 × 105 cells were adoptively transferred (i.v.) to CD45.1 or Rag1−/− mice. Recipient mice were immunized with OVA-alum (i.p.) 1 day after cell transfer. Three to four weeks later, CD44hiCD62LloCD25 memory phenotype CD4+ T cells (CD45.2) were isolated by MACS from splenocytes of the immunized mice.
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7

Autophagy-Regulated Naive T Cell Activation

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CD4+ CD62L+ naïve T cells were isolated from C57BL/6J (WT), Lck Cre+x Atg16L1flox/flox (cKO), and Atg16L1T300A/T300A mutant (T300A) mice using CD4 negative enrichment kits (Stemcell Technologies, Vancouver, Canada) and CD62L microbeads (Miltenyi Biotec, San Diego, CA). For each genotype, the cells were prepared independently from 3 mice as biological replicates. T cells isolated per genotype each received no stimulation, CD3/CD28 dynabeads (for 4h or 20h) or 1 μM Torin treatment (for 4h). Peak T cell activation, as defined by number of differentially expressed genes, after CD3/CD28 stimulation was observed at 20h; the 4h time point allowed us to perform a time-varying analysis of transcriptional programs in response to CD3/CD28 stimulation. A 4h Torin treatment activated autophagy in T cells.
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