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8 protocols using anti il 10 apc

1

Multicolor Flow Cytometry for Immune Cell Profiling

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Cells (3×105–5×105/well) were fist incubated in FcBlock (BD Pharmingen) and then with cocktails of antibodies using CD45-APCCy7 (BD Pharmingen, 30-F11), F4/80-PECy5 (eBioscience, BM8), CD11b-AlexaFluor700 (BD Pharmingen, M1/70), MHCII-biotin (eBiosciences, M5/114.15.2) followed by streptavidin-PETexasRed (BD Pharmingen), CD64-PE (BD Pharmingen, X54-5/7.1.1), CX3CR1-unconjugated (AbD Serotec, polyclonal) followed by anti-IgG(H+L)-FITC (Southern Biotech), and anti-IL10-APC (eBiosciences, JES5-16E3), CD3-PECy5 (eBiosciences, 145-2C11), CD4-PECy7 (eBiosciences, GK1.5), CD19-PE (eBiosciences, MB19-1), FoxP3-PE (eBiosciences, FJK-16s), and PD1-PE (eBiosciences, J43). For intracellular staining, cells were fixed and permeabilized with Cytofix-Cytoperm solution (eBiosciences). Flow results were computed with a BD LSR II flow cytometer and data analyses was performed by using the FACS Diva software (BD).
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2

Flow Cytometric Analysis of B Cell Populations

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Flow cytometric analysis of B cell populations was performed using our previously described gating strategies8 (link)15 (link)16 (link)17 (link). Following red cell lysis, cells were counted and stained with a cocktail of antibodies for the detection of the indicated populations using anti-CD19-AF700, anti-CD23-PE/Cy7, anti-CD21-E450, anti-CD43-PE/Cy7, anti-GL7-FITC, anti-CD138-PE, anti-B220-E450, anti-B220-APC, anti-IL-10-APC, anti-CD3-FITC, anti-CD4-PerCP and anti-CD8-PE/Cy7 antibodies from eBioscience and Biolegend. Plasma cells were phenotyped as (Dump (CD3, CD4, CD8, CD11b, GR1 & CD11c) CD138+CD19B220) with the Dump+ markers identified using biotinylated antibodies and svPE. Alternatively, splenocytes were stimulated with 50 ng/ml PMA (Sigma-Aldrich, UK) plus 500 ng/ml ionomycin (Sigma-Aldrich, UK) and 10 μg/ml LPS (E. coli O111:B4, Sigma-Aldrich, UK) for 1 h before addition of 10 μg/ml Brefeldin A (Sigma-Aldrich, UK) and cells were then incubated for a further 5 h at 37 °C with 5% CO2. Cells were fixed and washed several times in permeabilization buffer before anti-IL-10 was added in permeabilization buffer and incubated at 4 °C for 30 minutes. Cells were then washed three times with permeabilization buffer and finally with FACs staining buffer before data were acquired using a BD LSR II flow cytometer and analysis undertaken by FlowJo software (TreeStar).
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3

Stimulation and Analysis of Monocyte Cytokines

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PBMCs (3 × 105) obtained by a Ficoll-Hypaque gradient were incubated 10 μg/mL of SEA for 16 h, 37°C, and 5% of CO2. During the last 4 h of culture, Brefeldin A (10 μg/mL; Sigma, St. Louis, MO), which impairs protein secretion by the Golgi complex, was added to the cultures. Afterwards, the cells were stained with PERCPCy5.5-labeled antibody conjugated with CD14 (anti-CD14 PERCPCy5.5; clone 61D3), anti-CD16 FITC (clone CB16), anti-IL-10R PE (polyclonal), anti-IL-4Rα PE (clone hIL-4R-M57), and anti-HLA-DR PE (clone LN3) and then washed in PBS and fixed in 4% formaldehyde for 20 min at room temperature. Intracellular staining was performed with anti-IL-12 PE (clone C8.6) mAbs, anti-IL-10 APC (clone JES3-19F1), anti-TGF-β APC (clone 9016), anti-IL-6 APC (clone MQ2-13A5), and anti-TNF-α PECy7 (MAb11), all antibodies from eBioscience. The monocyte population was defined by nonspecific fluorescence from the forward scatter (FSC) and side scatter (SSC) as parameters such as cell size and granularity, respectively. Monocyte area corresponded to the specific region graph: region 1 (G1) (Figure 1(a)). A total of 100,000 events were acquired for all experiments.
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4

Murine Myeloid-Derived Suppressor Cell Characterization

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RPMI 1640, DMEM, FBS, and antibiotics were obtained from Life Technologies. Recombinant murine GM-CSF, anti–TGFB1-APC, and IL-2 were obtained from R&D Systems. The following antibodies were purchased from eBioscience: anti-Gr1 FITC, anti-Gr1 PE, anti-F4/80+ PE, anti-Cd11b+ PE, anti-CD11c+ APC, anti–PD-L1 PE, anti–PD-L1 FITC, anti–PD-L1 APC, anti–PD-L2 PE, anti-CD80 FITC, anti-CD86 FITC, anti–PD-1 APC, anti–CTLA-4 APC, anti-CD4 FITC, anti-CD8 FITC, anti–IFN-γ PE-cy7, anti-IL6 FITC, anti-IL10 APC, anti-IL12p70 PE, and functional grade anti–PD-L1 (MIH5) neutralizing antibody. For blocking, control antibody (IgG; rat IgG2b K Isotype Control Functional Grade Purified; eBioscience), anti–mouse IL-6 Functional Grade Purified neutralizing antibody (eBioscience), or anti–mouse IL-10 Functional Grade Purified neutralizing antibody (eBioscience) were used.
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5

Profiling Microglia Phenotypes in Mice

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All antibodies were purchased from BD Biosciences unless otherwise noted. Clones are indicated in parentheses. To determine microglia phenotype: anti-CD11b FITC (M1/70), anti-CD11b PerCPCy5.5 (M1/70), CD11c PECy7 (HL3), anti-CD45 APC (30-F11), anti-CD45 FITC (30-F11), anti-CD124 AlexaFluor 647 (mIL4R-M1), anti-CD210 PE (1B1.3a), anti-F4/80 PE (T45-2342), anti-I-Ab PE (AF6-120.1), anti-Ly-6G PE (1A8) were used. For staining of intracellular cytokines/chemokines: anti-CCL3 PE (DNT3CC, eBioscience), anti-CD206 APC (C068C2, Biolegend, San Diego, CA, USA), anti-IL-1β APC (NJTEN3, eBioscience), anti-IL-4 PE (11B11), anti-IL-10 APC (JES5-16E3) and anti-TNF PE (MP6-XT22) were used.
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6

Multiparameter Flow Cytometry of Mouse T Cells

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Cell surface staining was performed with approximately 1 × 106 cells and 0.1 μg antibodies in 100 μL PBS+1% FBS. Antibodies used were: anti‐IFN‐γ‐PE/Cy7 (XMG1.2), anti‐IL‐10‐APC (JES5‐16E3), anti‐CD39‐PE (24DMS1), anti‐T‐bet‐PE (eBio4B10), anti‐granzyme B‐eFluor660 (NGZB), anti‐CD44‐PE (IM7), anti‐CD45RB‐FITC (C363.16A), anti‐CD62L‐PE/Cy7 (MEL‐14), anti‐Foxp3‐eFluor660 (FJK‐16s), anti‐CD4‐FITC (RM4‐5), all from eBioscience (Hatfield, UK) and anti‐CD8ß‐APC (53‐5.8, BioLegend, London, UK). Blood was collected from the tail into sodium citrate anticoagulant (Sigma) and 50 μL stained directly with fluorochrome‐labeled antibodies for 15 min prior to erythrocyte lysis with 0.5 mL lysis buffer at room temperature (Sigma, 10 min). Intranuclear staining for T‐bet and Foxp3, and granule staining for granzyme B, were performed as described 36. For CFSE dilution assays lymph node and spleen cells were washed twice in PBS, labeled with 2.5 μM CFSE at 37°C for 10 min and washed in PBS + 1% FBS before culture. Analysis was performed using a FACScaliburTM flow cytometer and CellQuestTM software (BD Biosciences, Oxford, UK); gating strategies shown in Supplementary Figs. 1 & 2.
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7

Cytokine Analysis of Peptide-Stimulated T cells

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Leukocytes from SGs and spleens were stimulated with peptides at a final concentration of 3 μg/ml for 2 hr at 37°C. The following peptides were used to stimulate CD4+ T cells: m09 residues 133–147 (GYLYIYPSAGNSFDL), M25 residues 409–423 (NHLYETPISATAMVI), m139 residues 560–574 (TRPYRYPRVCDASLS), and m142 residues 24–38 (RSRYLTAAAVTAVLQ). The cultures were then supplemented with brefeldin A (2 μg/ml, Sigma-Aldrich) and incubated for a further 4 hr at 37°C. After stimulation, cells were labeled using a Zombie Aqua Fixable Viability Kit (BioLegend) and stained with anti-CD16/CD32 (Fc block, BioLegend) followed by anti-CD4–APC-Cy7 or anti-CD4–BV605 (clone RM4-5, BioLegend). Internal antigen expression was determined after fixation/permeabilization in BD Cytofix/Cytoperm Solution (BD Biosciences). Cells were stained with combinations of anti-IFNγ–APC-Cy7, anti-IFNγ–FITC, or anti-IFNγ–Pacific Blue (clone XMG1.2, BioLegend), anti-IL-10–APC or anti-IL-10–FITC (clone JES5-16E3, eBioscience), and anti-T-bet–BV605 (clone 4B10, BioLegend). Cells were acquired using an Attune NxT (Thermo Fisher Scientific), and data were analyzed using FlowJo v10.5.3 (FlowJo LLC).
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8

Flow Cytometric Analysis of Colon Macrophages

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Mouse colon tissues were treated with collagenase (I, II, and IV, Sigma Aldrich) and dispersed using the gentleMACs tissue dissociator (Miltenyi Biotech, Cologne, Germany). Cell suspensions were incubated overnight in media before staining for flow cytometry according to standard Biolegend protocols (Biolegend, San Diego, CA). Macrophages were stained with anti-F4/80-PE or FITC (Biolegend, BM8), anti-CD11b-APC or PE (eBioscience M1/70), anti-IL-1α-PE (eBioscience, ALF-161), anti-IL-1β-APC (eBioscience NJTEN3), anti-IL6 (eBioscience MP5-20F3), anti-TNF-α-PEcy5 (MP6-XT22 eBioscience), anti-IL-10-APC (eBioscience JES5-16E3), anti-Arg1-FITC (R&D Systems IC5868F) or isotype controls. All samples were run on a Guava easyCyte 8HT flow cytometer. Cells were gated on the forward and side scatter plot to remove debris, next on the F4/80+CD11b+ population and examined for cytokines. Macrophage numbers per colon were calculated by the percent of gated cells in relation to the overall number of cells per mouse colon.
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