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6 protocols using ab8592

1

Immunofluorescence and Western Blot Techniques

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Immunofluorescence: Mouse anti-cytochrome c (1:100 dilution, ab65311) and rabbit anti-desmin (1:80 dilution, ab8592) were from Abcam (Cambridge, UK). Mouse anti-α-tubulin (1:2000 dilution, T5168) was from Sigma Aldrich (St.Lois, MO, US). Alexa 488 goat anti-mouse, Alexa 546 goat anti-mouse, and Alexa 488 goat anti-rabbit were from Invitrogen (Carlsbad, CA, USA). Hoechst and Alexa-488 Phalloidin was from Molecular probes (Invitrogen, Paisley, UK). Western blot: Mouse anti-Grp75 (Hsp70) (ab13529, 1:2000 dilution), rabbit anti-PARK7 (ab37180, 1:2000 dilution), rabbit anti-actin (1:500 dilution, ab1801), rabbit anti-desmin (1:2000 dilution, ab8592) were from Abcam. Mouse anti-α-tubulin (1:10 000 dilution, T5168) was from Sigma Aldrich (St. Lois, MO, US). CY3-conjugated goat anti-mouse and CY5-conjugated goat anti-rabbit (1:2500 dilution, PA43010 and PA45011, respectively), were procured from GE Healthcare (Buckinghamshire, UK). JC-1 Mitochondrial membrane potential probe was from Thermo Fisher Scientific (Waltham, MA, US) and Z-LEHD-FMK (irreversible caspase-9 inhibitor, 20 μM) was from Abcam (Cambridge, UK)).
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2

Multimodal Muscle Imaging Techniques

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Frozen transverse and longitudinal muscle sections were blocked in 10% foetal bovine serum/PBS for 20 min, incubated with primary antibodies for 1 h at room temperature or overnight at 4°C, washed in PBS and incubated with suitable Alexa Fluor secondary antibodies for 1 h at room temperature. Sections were examined under an Axioplan 2 Microscope System (Carl Zeiss, Germany). The following antibodies and dilution were used: goat polyclonal anti-utrophin (1:500, URD40) (75 (link)), mouse monoclonal anti- β-dystroglycan (1:100, MANDAG2, CIND), rabbit monoclonal anti- α1-CTFP/dystrobrevin (1:1000) (76 (link)), rabbit polyclonal anti desmin (1:100, ab8592, abcam), rabbit polyconal anti-collagen type I (1:100, 600-401-103-0.5, Rockland), mouse anti-MYHC1 (1:200, B8-F8), mouse anti-MYHC2A (1:200; SC-71); mouse IgM anti-MYHC2B (1:100, BF-F3; all from German Collection of Microorganisms and Cell Cultures) and polyclonal anti- α-Bungarotoxin AlexaFluo 488 conjugate antibody (1:500, B-13422, Life Technologies).
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3

Isolation and Characterization of Dystroglycan Complex

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To isolate the DGC and associated proteins, 100 μg of whole cardiomyocytes extract was loaded on a 10-40% glycerol gradient and centrifuged for 24 h at 35,000 r.p.m. using a MLS-50 Swinging-Bucket rotor (Beckman Coulter). Fractions collected from glycerol gradients were subjected to trichloroacetic acid (TCA) precipitation (10%) and precipitates were analysed by SDS–PAGE and immunoblotting. The following primary antibodies were used: anti-rat recombinant Agrn (MAB550, R&D systems), anti-α-dystroglycan (sc-28534, Santa Cruz), anti-β-dystroglycan (Mandag2[7d11], DSHB), anti-syntrophin (sc-50460, Santa Cruz), anti-dystrophin (ab15277, Abcam), anti-Grb2 (sc-8034, Santa Cruz), anti-Myh6 (ab50967, Abcam), anti-actin (A2066, Sigma-Aldrich), anti-Actn1 (A2543, Sigma-Aldrich), anti-Des (ab8592, Abcam), anti-Yap (sc-15407, Santa Cruz) and anti-H3f3a (ab62642, Abcam). Horseradish peroxidase anti-mouse, anti-rabbit or anti-goat (Sigma-Aldrich) was used as secondary antibody.
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4

Quantitative Histological Analysis of Tissue Samples

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Histological slides were prepared with hematoxylin-eosin (HE) stain and were used to mark areas of interest for performing tissue sample array arrangement or Tissue Microarray (TMA). Next, two 4 µm-thick paraffin-embedded sections of the TMA blocks were transferred to electrically charged Star Frost™ (Braunschweig, Germany) slides and incubated with an anti-Desmine (ab8592; Abcam, Cambridge, UK), anti-connexin 43 (ab217676; Abcam, Cambridge, UK) and anti-factor VIII (275376; Abcam, Cambridge, UK) overnight in a humidified chamber at a temperature between 2–8 °C [28 (link)].
Immunoreactivity was developed by adding DAB chromogen-substrate solution (Spring) to the slides. Harris hematoxylin was used for counterstaining. Positive and negative controls were performed in parallel with all reactions. The slides were scanned using the Axio Scan.Z1 scanner (Carl Zeiss, Jena, Germany). The generated files were fragmented into single images and approximately 25 images were selected for analysis. The areas of immunopositive markings for the antiprotein antibodies were quantified using Image-Pro Plus version 4.5 software (Media Cybernetics, Rockville, MD, USA). The immunopositive objects were selected using a “mask” to standardize and automate the process. Numerical data of the immunopositive marking area were generated and subsequently exported to an Excel spreadsheet.
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5

Quantitative Liver Protein Analysis

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Protein analyses of whole liver tissue lysates were performed using the semidry Western blot technique according to standard protocols. Antibodies against α‐SMA (M0851; Dako/Agilent), desmin (ab8592; Abcam), GFAP (MAB360; Merck/Millipore), fibronectin (610078; Becton Dickinson), ITGA5 (ab150361; Abcam), ITGB1 (ab52971; Abcam), HGF (LS‐C486534; Lifespan Biosciences), and γ‐tubulin (T5326; Sigma‐Aldrich) were used. The detection was carried out using horseradish peroxidase (HRP)‐coupled goat‐anti‐mouse or goat‐anti‐rabbit antibodies (Merck/Millipore) and Western Bright Quantum or Sirius HRP substrates (Advansta). Visualization and documentation was performed with ChemiDoc Imaging System (BioRad). The intensities of Western blot protein bands were analyzed using the multiplex band analysis tool of the AlphaView software (Proteinsimple) and normalized to the intensity of γ‐tubulin bands.
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6

Immunofluorescence Staining of Muscle Cells

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Cells were fixed with 4% paraformaldehyde (PFA) for 5 min at room temperature, then permeabilized and blocked with 0.5% Triton X-100 and 10% goat serum for 20 minutes at room temperature. Cells were incubated in primary antibody for 1 h at room temperature at a 1:30 ratio for anti-desmin (ab8592, Abcam), anti-dystrophin (NCL-DYS1, Novocastra), and anti-myosin heavy chain (NCL-MHCf, Novocastra). Cells were incubated with 1:500 anti-rabbit or mouse IgG (H+L) highly cross-adsorbed secondary antibody, Alexa Fluor 594 (Invitrogen). SlowFade Gold Antifade Mountant with DAPI (Invitrogen) was added and cells were stored at 4°C.
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