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Isopropyl b d 1 thiogalactopyranoside

Manufactured by Thermo Fisher Scientific

Isopropyl-b-D-1-thiogalactopyranoside is a synthetic chemical compound commonly used in molecular biology and biochemistry as an inducer of gene expression. It functions by binding to and inactivating the lac repressor protein, which in turn allows transcription of genes under the control of the lac operon.

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4 protocols using isopropyl b d 1 thiogalactopyranoside

1

RNAi Knockdown of cdk-1 in C. elegans

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RNAi was delivered by feeding E. coli strain HT115(DE3) expressing double-stranded RNA (dsRNA) to synchronized L1 stage strains. Transcription of dsRNA was induced with 1 mM isopropyl-b-D-1-thiogalactopyranoside (Thermo Scientific, R0393) in bacterial cultures for 1 hr at 37 °C. After an hour, cultures were plated on NGM plates topically treated with 2.5 µl each of 30 mg/mL carbenicillin (Alfa Aesar, J61949) and 10 µl of 1 M IPTG. The RNAi vector targeting cdk-1 was obtained from the Vidal RNAi library (Rual et al., 2004 (link)). The empty vector L4440 was used as a negative control. RNAi vectors were verified by Sanger sequencing.
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2

Expression and Purification of CtaB PTPSD

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The membrane topology and the boundaries the periplasmic sensing domain of CtaB (CtaB PTPSD, residues 32-272) from P. fluorescens Pf0-1 (UniProt ID Q3KK38) were predicted by TOPCONS server (http:// topcons.net/) (19) (Figure 1). The sequence encoding CtaB PTPSD was codon optimized for expression in Escherichia coli, synthesized and ligated into the pET151/D-TOPO vector (Invitrogen) by Genscript to generate an expression vector that harbors an N-terminal His6 tag followed by a TEV protease cleavage site. The expression vector was introduced into E. coli BL21 (DE3) (Novagen) and cells were grown in Luria-Bertani medium supplemented with 50 µg/mL ampicillin to an OD 600 of 0.6 at 310 K. Overexpression of CtaB PTPSD was induced with 0.5 mM isopropylb-D-1-thiogalactopyranoside (Thermo Scientific) and growth was continued for 3.5 h at 210 K. The cells were harvested by centrifugation at 6,000 g for 15 min at 277 K. The cells were resuspended in buffer A (10 mM Tris-HCl buffer pH 8.0 and 200 mM NaCl), lyzed by sonication and centrifuged at 10,000 g for 30 min at 277 K. SDS-PAGE gel electrophoresis of clarified supernatant and pellet confirmed that CtaB PTPSD expressed in inclusion bodies (IBs).
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3

ELP Expression and Purification from E. coli

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ELP expression vectors were transformed into OneTouch BL21 (DE3) E. coli (Invitrogen, Carlsbad, CA) cells, and 1 L cultures of these cells were grown in Terrific Broth (TB) (Thermo Fisher Scientific, Waltham, MA) supplemented with 100 µg/mL ampicillin (Thermo Fisher Scientific) and 10 mM L-proline (Sigma-Aldrich, St. Louis, MO). Expression was induced for 24 h using 2 mM isopropyl b-D-1-thiogalactopyranoside (Thermo Fisher Scientific).
Purification was achieved by first performing denaturing metal-affinity chromatography and eluting the ELPs using an imidazole step gradient. Buffered 8 M urea (Thermo Fisher Scientific) was used to lyse the cells and ensure the ELPs were fully soluble and free from any inclusion bodies. The urea was removed during the extensive column washing. Eluents were screened for the presence of ELPs by gel electrophoresis or by heating them to room temperature or 37°C, depending on the construct, and observing which samples turned reversibly cloudy. Samples confirmed to contain ELPs were combined and then subjected to one round of ITC for final purification. The temperature used to cause ELP aggregation varied depending on the construct. The purification was confirmed with denaturing PAGE (SDS-PAGE) and the ELP concentrations were measured by sample absorbance at 280 nm.
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4

Heterologous Expression of CtaA Periplasmic Domain

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The two transmembrane helices of CtaA from P. fluorescens Pf0-1 (GenBank: ABA76168.1) have been predicted to comprise residues 7-33 and 278-301 by the TMHMM sever v.2.0 (http://www.cbs.dtu.dk/services/ TMHMM-2.0/) (26) (Figure 1). The sequence for the periplasmic sensing domain (CtaA peri , residues 34-277) was codon-optimized for expression in Escherichia coli and synthesized and ligated into the expression vector pET151/D-TOPO (Invitrogen) by GenScript. The protein construct had an N-terminal His 6 -tag separated from the CtaA peri coding sequence by the linker GKPIPNPLLGLDSTENLYFQ↓GIDPFT containing a Tobacco Etch Virus (TEV) protease cleavage site (underlined). The E. coli BL21 (DE3) cells (Novagen) were transformed with the expression vector, grown at 310 K in Luria Bertani broth supplemented with 50 mg/mL ampicillin to OD 600 of 0.6, and then protein expression was induced with 0.5 mM isopropyl-b-D-1thiogalactopyranoside (Thermo Scientific) for 3.5 h at 310 K. The cells were harvested by centrifugation at 6,000 g for 15 min at 277 K.
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