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8 protocols using nifuroxazide

1

Investigating STAT Inhibition in CF Cells

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The HaploReg v2.0 database (Broad Institute, MIT and Harvard) (40 (link)) was used to extract variants that disrupt STAT motifs or have STAT transcription factor binding sites detected through chromatin immunoprecipitation-DNA sequencing in ENCODE cells around chrX:115.35 to 115.65 Mb (hg19), a region selected to include intergenic genomic variation 5′ of the SLC6A14 gene, where an association with CF lung disease has been reported (9 (link)). To test the effect of STAT inhibition, Calu-3 cell monolayers were treated with dimethyl sulfoxide (DMSO; vehicle control), FLA-PA (1 µg/ml; InvivoGen, San Diego, CA, USA), nifuroxazide (1 µM; Selleck Chemicals, Houston, TX), or a combination of FLA-PA and nifuroxazide (at the previously stated concentrations) for 2 h. Cells were lysed, and RNA was extracted for quantitative RT-PCR as described above.
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2

Preparation of Pharmaceutical Compounds

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Stock solutions of Ruxolitinib, BSK-805, Stattic, SH-4- 54 and Nifuroxazide (Selleckchem, Munich, Germany) were prepared in dimethyl sulfoxide (DMSO). Palbociclib (Selleckchem, Munich, Germany) stock solution was prepared in water. Chemotherapeutic drugs Paclitaxel, Docetaxel and Gemcitabine (Sigma Aldrich Chemie GmbH, Munich, Germany) stock solutions were prepared in DMSO. Working concentrations were freshly prepared in medium for immediate use. Cisplatin (Sigma Aldrich Chemie GmbH, Munich, Germany) was prepared fresh in H2O.
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3

STAT Inhibitor Cytotoxicity Assay

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STAT inhibitors (Fludarabine, Stattic, and Nifuroxazide) were purchased from Selleck (Houston, TX). For STAT3 and PanSTAT inhibitor assays A549 cells were pretreated for 3 h with 1 μM Stattic or Nifuroxazide respectively. For STAT1 inhibitor assays A549 cells were pretreated for 24 h with 1 μM Fludarabine. After pretreatment cells were then treated with 30 units of IFNβ (R&D systems, Minneapolis, MN) for 6 h then collected in Trizol (Life Technologies, Carlsbad, CA). For STAT inhibitor + Poly (I:C) (50 μg/ml) experiments, cells were harvested in Trizol after 12 h. Toxicity of each STAT inhibitor was determined by MTT assay on A549 cells using varying concentrations of each inhibitor in a 96 well plate. MTT reagents (Trevigen, Gaithersburg, MD) were added according to manufacturer’s protocol and absorbance wavelengths were read at 690 nm and 540 nm on an Epoch plate reader (Biotek, Winooski, VT). Viability % was determined by the following equation: [(untreated control absorbance ─ treatment group absorbance) ÷ untreated control absorbance] × 100.
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4

Regulation of Lysosome-Mediated Inflammation

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Recombinant murine IFN-γ and TNF-α were purchased from PeproTech (Rocky Hill, USA). Antibodies against β-actin, iNOS, NF-κB p65, phospho-NF-κB p65, IκBα, histone H3, STAT1, phospho-STAT1 (Tyr701), AKT, phospho-AKT (Ser473), phospho-AKT (Thr308), LAMP1, PPCA, and LAMP-2s (ABL93) were purchased from Cell Signaling Technology (Danvers, USA). Antibodies against LAMP-2A, HSPA8, NFAT1, and IKKα+β were purchased from Abcam (San Francisco, USA). L-NMMA, Fludarabine, MK2206, PDTC, Nifuroxazide, and LY294002 were purchased from Selleckchem (Houston, USA). BAY11-7082 was purchased from MedChemExpress (Shanghai, China). ConA, Griess reagents, and the lysosome isolation kit were from Sigma (St Louis, USA). C57BL/6 mice were purchased from the Shanghai Laboratory Animal Center of the Chinese Academy of Sciences and maintained under specific pathogen-free conditions in the vivarium of the Shanghai Institute of Nutrition and Health of the Chinese Academy of Sciences. All animal experiments were performed according to the guidance of the Institutional Animal Care and Use Committee of the Shanghai Institutes for Biological Sciences of the Chinese Academy of Sciences, and complied with the Guide for the Care and Use of Laboratory Animals published by the U.S. National Institutes of Health.
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5

Antibody and Reagent Preparation Protocol

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The following reagents were used: MMC, nifuroxazide, U0126, SP600125, and cycloheximide were purchased from Selleck Chemicals (Houston, TX, USA). Stock solutions of these reagents were prepared in dimethyl sulfoxide (DMSO) or water at a concentration of 5 ~10 mmol/L and they were stored at −20 °C before use. Working solutions of these reagents were diluted from the stock with cell culture medium and they were used at concentrations ranging from 0.5 μmol/L to 20 μmol/L for the treatment of cell lines. The following antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA): MHC-I, p65, phospho-p65, phospho-STAT3, STAT3, c-JUN, phospho-c-JUN, ERK, phospho-ERK, JNK, and phospho-JNK. Human B7H1/PD-L1 polyclonal was purchased from Santa Cruz Biotechnology (Dallas, TX, USA); and IFNGR1 and GAPDH were from Abcam (Cambridge, UK). Polyclonal goat anti-mouse and goat anti-rabbit secondary antibodies were obtained from R&D Systems (Minneapolis, MN, USA).
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6

CD40/CD40L Signaling Modulation in Hepatoma

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HepG2.2.15 or HepAD38 cells transfected with CD40 siRNA/siCtrl were stimulated with CD40 ligand (CD40L;1 μg/ml; Cell Signaling Technology, Danvers, MA, USA), neutralizing by preincubation with monoclonal antagonistic antibody against CD40 (anti-CD40; 5 μg/ml; R&D Systems, Minneapolis, MN, USA) or antagonistic antibody against CD40L (anti-CD40L; 0.1 μg/ml; Ancell, Bayport, MN, USA) for 1 h. HepG2.2.15 or HepAD38 cells were seeded in a 6-well plate (5 x 105 cells/well) overnight and then transfected with CD40 plasmid/vector. The inhibitor nifuroxazide (Selleck Chemicals, Houston, TX, USA) at a final concentration of 20 μM was added to the medium for 24 h.
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7

Toll, Imd, and JAK/STAT Pathway Inhibition on Spodoptera frugiperda Resistance to Beauveria bassiana

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The third-instar larvae were injected with the Toll inhibitor (BAY 11-7082), Imd inhibitor (parthenolide), JAK/STAT inhibitor mix (20 μM tyrphostin AG 490, Selleck Chemicals, S1143; 5 μM nifuroxazide, Selleck Chemicals, S4182), heat-inactivated B. bassiana conidial suspension, and 0.15 mol/L NaCl solution (as the control), with a volume of 1 μL. A total of 60 larvae were injected in each treatment and performed in triplicate. After 24 h, the injected S. frugiperda larvae were submerged in B. bassiana conidial suspension (108 spores/mL, with 1% penicillin–streptomycin) for 5 s and then reared with fresh corn at 70% humidity and 26°C ± 2°C. The number of dead larvae was recorded every 12 h. A lethal time of 50% (LT50) was used to show the resistance of S. frugiperda larvae against B. bassiana. LT50 and confidence intervals of 95% of each treatment were analyzed and calculated using SPSS21.0.
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8

Cytokine and Inhibitor Stimulation of MSCs

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MSCs were cultured in 12-well or 48-well plates, upon reaching 80–90% confluency, cells were washed with PBS and then treated with indicated stimulations. The stimulations were TNFα (eBioscience, MA, USA) (10 ng/ml), IFNγ (eBioscience, MA, USA) (10 ng/ml), dexamethasone (0.1, 1, 5 or 10 ng/ml) (Sigma, MA, USA), DMSO (Sigma, MA, USA), RU486 (2 μM) (Selleck, WA, USA), BAY 11-7082 (2 μM) (Selleck, WA, USA), nifuroxazide (40 μM) (Selleck, WA, USA) alone or a combination of these two cytokines and inhibitors for indicated times. (n = 3 or 4 in each group)
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