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16 protocols using bicuculline

1

Neuronal Response to Oxidative Stress

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Neuronal cultures (mixed cortical-hippocampal) at DIV 10-12 were used. For H2O2 treatment, H2O2 was added to the conditioned cell culture medium at a final concentration of 200 μM and cells were incubated for 0.5, 3, 6 or 16 hours at 37°C. In case of bicuculline treatment, bicuculline (Abcam) was added to the conditioned cell culture medium at a final concentration of 20 μM and cells were incubated for 30 minutes at 37°C. Control cells were left untreated. After the stimulation, cell culture plates were placed on ice and washed 2 times with ice-cold TBS-Ca-Mg buffer. Next, neurons were scraped in lysis buffer containing 20 mM Tris pH 7.5, 150 mM NaCl, 2 mM EDTA, 0.5% Triton-X, 0.5% NP40, 2 mM MgCl2, 10% glycerol, and protease and phosphatase inhibitors. The lysate was centrifuged (16,100x g, 15 min) to remove cell debris. The protein content was measured by BCA method and samples were prepared for western blotting. If the cells were used for immunostainings, they were fixed with 4%PFA/PBS after the stimulation.
To block lysosome function, the culture medium was supplemented with pepstatin (10 μM), leupeptin (100 μM), and chloroquine (50 μM), and the cells were incubated for 2 hours at 37°C prior to cell surface biotinylation.
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2

Comprehensive Antibody Panel for Epigenetic Regulation

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Commercial antibodies used were: anti-FLAG (Sigma), anti-CDYL (Sigma, HPA035578), anti-REST (Santa Cruz, sc-25398), anti-EZH2 (Proteintech, 21800-1-AP), anti-HDAC1 (sc-7872), anti-HDAC2 (sc-7899), anti-SIRT1 (sc-15404), anti-FOS (ABclonal, A0236), anti-SET8 (CST, #2996), anti-UTX (sc-79334), anti-KDM5B (sc-67035), anti-CtBP (Proteintech, 10972-1-AP), anti-MeCP2 (ABclonal, A5694), anti-Nav1.6 (Alomone, ASC-009), anti-H3K9me2 (Abcam, ab1220), anti-H3K9me3 (Abcam, ab8898), anti-G9a (Millipore, 09-071), anti-H3K27me3 (Millipore, 07-449), anti-H3K27ac (Abcam, ab4729), anti-H3K4me1 (Abcam, ab8895), anti-H3K4me3 (Abcam, ab8580), anti-GAPDH and anti-Actin (MBL). A CDYL antibody that we generated (peptides antigen: DGFQGESPEKLDPVDQG and IDDRRDQPFDKRLRFSV; B&M) was used for ChIP-seq, western blotting with rat/mouse cell lysates, and immunohistochemistry. Protein A/G beads were from GE Healthcare Biosciences, protease inhibitor mixture cocktail was from Roche Applied Science. Tetrodotoxin, bicuculline, CGP 55845, and DL-AP5 were from Abcam. Neurobiotin was from Vector Laboratories. Streptavidin Alexa Fluor 488 was from Life Technologies. 4,9-TTX was from Focus Biomolecules. All other reagents were purchased from Sigma-Aldrich.
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3

GABAergic Neuron Perturbation Assay

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For the main dataset/experiment, the GABAA antagonist Bicuculline (BIC; Abcam, Cambridge, United Kingdom) was pipetted directly from the stock solution into the culture medium to generate a 5μM solution. The concentration was selected based on the result reported in Ueno et al. (1997 (link)). Recordings started 5 min after the application of the drug. For the test dataset/experiment, we recorded the perturbation response of neuronal cultures following BIC, and following Gabazine (GBZ; Abcam, Cambridge, United Kingdom). GBZ (5μM) was introduced following the same procedure stated in the description of the main dataset.
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4

Pharmacological Modulation of GABA Signaling

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NG2DsRed mice received daily intraperitoneal (i.p.) injections (from P5-P11 or from P11-P15) of either 1 mg/kg bicuculline (abcam) in sunflower seed oil (Sigma 47123), 100 mg/kg vigabatrin in saline or 50 mg/kg tiagabine in saline (Tocris Biosciences). Control mice were injected with vehicle alone. Injection volume was 10 μl per g body weight, and solutions were warmed to 37 °C. The dose of bicuculline used was roughly half the CD50 reported for P7 rats69 (link); two mice exhibited seizures and were excluded from the study.
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5

Pharmacological Modulation of GABA Signaling

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NG2DsRed mice received daily intraperitoneal (i.p.) injections (from P5-P11 or from P11-P15) of either 1 mg/kg bicuculline (abcam) in sunflower seed oil (Sigma 47123), 100 mg/kg vigabatrin in saline or 50 mg/kg tiagabine in saline (Tocris Biosciences). Control mice were injected with vehicle alone. Injection volume was 10 μl per g body weight, and solutions were warmed to 37 °C. The dose of bicuculline used was roughly half the CD50 reported for P7 rats69 (link); two mice exhibited seizures and were excluded from the study.
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6

Investigating IPSC Modulation by Drugs

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Spontaneous inhibitory postsynaptic currents (sIPSC) were recorded in the absence and presence of a variety of drugs including bicuculline, morphine, DAMGO, DPDPE (Abcam, Cambridge, UK), PP2, PP3 and SL327 (all from Tocris, Bristol, UK). All drug solutions were prepared as required on the day of use from frozen stock solutions and were diluted in the extracellular solution. Control and drug containing solutions were applied to the recording chamber using a peristaltic pump (Scientifica, East Sussex, UK). DAMGO and morphine were applied at ascending concentrations to establish the concentration-response relationships. Each concentration was applied to slices for 450 s to establish steady state; with up to seven morphine concentrations per neuron, there was a maximum of 53 min of exposure.
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7

Forsythoside B Neuroprotective Protocol

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Forsythoside B (FB, molecular weight 756.7, 99% purity) was purchased from Shanghai Tongtian Biotechnology Co., Ltd. (Shanghai, China). Antioxidant edaravone or redicava (Simcere) was used as a positive control for ischemia experiments. N-Methyl-d-aspartate (NMDA) receptor antagonist d-2-amino-5-phosphonovalerate (AP5, 50 μmol/L), α-amino-3-hydroxyl-5-methyl-4-isoxazole-propionate (AMPA)/kainate glutamate receptor antagonist 6-cyano-7-nitroquinoxaline-2,3-dione (CNQX, 10 μmol/L) were purchased from Sigma–Aldrich. Neurobiotin tracer N-(2-aminoethyl) biotinamide hydrochloride (Vector Laboratories), Alexa Fluor 488 or 647-conjugated streptavidin (Molecular Probes), sodium channel blocker tetrodotoxin (TTX, 500 nmol/L, Baomanbio), γ-aminobutyric acid A (GABAA) receptor antagonist bicuculline (10 μmol/L, Abcam), and GABAB receptor antagonist CGP55845 (2 μmol/L, Abcam) were prepared before use, and the purity of each standard compound is no less than 98% by high-performance liquid chromatography analysis. FB and edaravone used in behavioral experiments were diluted in sterile normal saline for intravenous injection.
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8

Ubiquitination of AMPAR Regulation

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The ubiquitination of AMPARs was induced by incubating neurons in artificial cerebrospinal fluid (ACSF; in mM, 25 HEPES, 120 NaCl, 5 KCl, 2 CaCl2, 2 MgCl2, 30 D-glucose, pH 7.4) containing 40 μM bicuculline (Abcam) or 1 μM PMA (phorbol 12-myristate 13-acetate, Sigma) for 10 min at 37°C. In some experiments, neurons were pre-incubated with 1 μM PMA for 10 min prior to bicuculline treatment. For experiments involving the PKC blocker, neurons were pre-treated with 1 μM Go-6983 (Tocris) or DMSO (vehicle control) for 10 min prior to and present throughout the bicuculline or PMA/bicuculline treatments. Neurons were then lysed in warm 1% SDS (in PBS) and diluted in 10 volumes of ice-cold cell lysis buffer (1% Triton X-100, 1 mM EDTA, 1 mM EGTA, 50 mM NaF, 5 mM Na-pyrophosphate in PBS) supplemented with 10 mM NEM (N-ethylmaleimide, Sigma) and Complete EDTA-free protease inhibitor cocktails (Roche). Lysates were centrifuged at 14,000 rpm for 20 min at 4°C and cleared with protein A- or G-Sepharose beads. Pre-cleared lysates were then incubated with antibodies (anti-ubiquitin or anti-GFP) coupled to protein A- or G-Sepharose overnight at 4 °C, followed by four washes with ice-cold lysis buffer and elution in 2× SDS sample buffer. The immunoprecipitated proteins were resolved by SDS-PAGE and probed by western blot analysis with specific antibodies against GluA1, GluA2 and ubiquitin.
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9

Chemical Long-Term Potentiation in Neurons

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cLTP was performed on primary rat hippocampal and cortical neurons at DIV 15-17 as previously described, with some modifications (Tan et al., 2017 (link)). Briefly, neurons were washed and incubated in pre-warmed low Mg2+ artificial cerebrospinal fluid (ACSF; 120 mM NaCl, 2 mM CaCl2, 5 mM KCl, 0.4 mM MgCl2, 30 mM glucose, 25mM HEPES, pH 7.4) containing 0.5 μM tetrodotoxin (Abcam), 20 mM bicuculline (Abcam) and 5 μM strychnine (Sigma) at 37°C for 45 min. cLTP was induced by incubating neurons with low Mg2+ ACSF supplemented with 200 μM glycine, 20 μM bicuculline and 5 μM strychnine at room temperature for 5 min. To inhibit the activity of CaMKIIα, neurons were treated with KN-93 (Abcam, 10 μM) for 15 min prior to and during cLTP induction.
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10

Chemical Long-Term Potentiation in Neurons

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cLTP was performed on primary rat hippocampal and cortical neurons at DIV 15-17 as previously described, with some modifications (Tan et al., 2017 (link)). Briefly, neurons were washed and incubated in pre-warmed low Mg2+ artificial cerebrospinal fluid (ACSF; 120 mM NaCl, 2 mM CaCl2, 5 mM KCl, 0.4 mM MgCl2, 30 mM glucose, 25mM HEPES, pH 7.4) containing 0.5 μM tetrodotoxin (Abcam), 20 mM bicuculline (Abcam) and 5 μM strychnine (Sigma) at 37°C for 45 min. cLTP was induced by incubating neurons with low Mg2+ ACSF supplemented with 200 μM glycine, 20 μM bicuculline and 5 μM strychnine at room temperature for 5 min. To inhibit the activity of CaMKIIα, neurons were treated with KN-93 (Abcam, 10 μM) for 15 min prior to and during cLTP induction.
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