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29 protocols using cyclin d

1

Protein Expression and Analysis

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Cells were split by radio immunoprecipitation assay (RIPA) buffer (Beyotime, Shanghai, China) add with protease inhibitor (Pierce, Rockford, IL, USA). After centrifugation removal cell debris, add 1/4 volume of lysis buffer to the lysates, and then boiling 10 min in water. The total protein sample was pointed into and separated in the SDS-polyacrylamide gel. Then transferred it into a PVDF membrane (Millipore, Boston, MA, USA). Next, the membrane was blocked in 5% defatted milk for 2 h. After that, the membrane was incubated with primary antibodies at 4 °C overnight followed by a secondary antibody at room temperature for 1.5 h. Protein bands were exposure by chemiluminescence reagents (Millipore) and quantified using the Image Lab Image Document. Antibodies PPARγ, ATGL (Cell Signaling, Boston, MA, USA), KLF9 (Abcom, Cambridge, UK), aP2, FAS, cyclin B, cyclin D, cyclin E, p27, ZEB1 (Santa Cruz, Dallas, TX, USA), GAPDH (Boster, Wuhan, China), β-tublin (Sungene Biotech, Tianjin, China) were used.
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2

Pathway Analysis of Protein Expression

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Cells were lyzed with RIPA buffer and total 30 μg of protein was loaded on 6–12% SDS-PAGE. After transferring to PVDF membranes, each membrane was blotted with the appropriate antibodies. Anti-PARP, -p-EGFR, -EGFR, -p-STAT3, -STAT3, -p-JAK1, -p-JAK2, -p-AKT, and -AKT antibodies were purchased from Cell Signaling (Danvers, MA, USA). Anti-p-SRC, -SRC, -p-ERK1/2, -ERK1/2, -VEGF, -Cyclin D, -MMP-9, -Survivin, and -Tubulin were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Immunofluorescence assays for p-STAT3 nuclear translocation in MDA-MB-231 cells were done with anti-p-STAT3 antibody and anti-Alexa Fluor-488 antibody (Invitrogen, Eugene, OR, USA). For the counter staining, TOPRO-3 (Invitrogen, Eugene, OR, USA) was used to stain the nucleus. Images were obtained with Olympus FV10i Self-Contained Confocal Laser System.
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3

Comprehensive Cell Cycle Regulation Assay

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The monoclonal or polyclonal antibodies against cyclin A, cyclin B, cyclin C, cyclin D, cyclin E, CDK2, CDK4, CDK6, p16, p18 and p27 were purchased from Santa Cruz Biotechnology. The monoclonal antibodies against p21 and p57 were obtained from BD Biosciences. Horseradish peroxidase-conjugated goat anti-mouse IgG and horseradish peroxidase-conjugated goat anti-rabbit IgG were obtained from Bio-Rad. RNA and DNA extract kits, RNA RT and polymerase chain reaction (PCR) kits were obtained from Qiagen. NorthernMAX kit was from Ambion. Immunoblotting was performed using the Enhanced chemiluminescence (ECL) western blot detection kit (Amersham Biosciences). Biotin Chromogenic Detection kit was from Thermo Scientific. Protein A-Sepharose 4B Conjugate and Dynabeads MyOne Streptavidin C1 magnetic beads were obtained from Invitrogen. The cell lines used in this study were from American Type Culture Collection (ATCC).
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4

Protein Expression Profiling of Mandibles

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Proteins were extracted from mandibles and quantitated using a protein assay kit (Bio‐Rad, Mississauga, Ontario, Canada). Protein samples (20 μg) were fractionated by SDS‐PAGE and transferred to nitrocellulose membranes. Immunoblotting was carried out as described19 using antibodies against Cyclin D (1:300, sc‐8396, Santa Cruz), CDK4 (1:300, sc‐23896, Santa Cruz), p27 (1:500, sc‐1641, Santa Cruz), p53 (1:500, sc‐126, Santa Cruz) and β‐actin (1:1000, AP0714, Bioworld Technology). Bands were visualized using ECL chemiluminescence (Amersham) and quantitated by Scion Image Beta 4.02 (Scion Corporation, NIH).
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5

Western Blot Analysis of Adipocyte Proteins

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The protocol of western blot was followed according to a previous study [10 (link)]. Briefly, adipocytes were split by radioimmunoprecipitation assay (RIPA) buffer (Beyotime, China) by adding protease inhibitor (Pierce, WA, USA). The total protein sample was separated in the SDS-polyacrylamide gel. Then, it was transferred into a PVDF membrane (Millipore, Bedford, MA, USA). Next, the membrane was blocked in 5% defatted milk for 2 h. After that, the membrane was incubated with primary antibodies at 4 °C overnight followed by a secondary antibody at room temperature for 1.5 h. The antibodies Cyclin B, Cyclin D, Cyclin E, PPARγ, and AP2 were purchased from Santa Cruz (CA, USA); C/EBPα and SREBP-1 were purchased from Abcam; p62, LC, ATGL, and HSL were purchased from CST (Boston, MA, USA); and β-tubulin was purchased from Sungene Biotech (Shanghai, China).
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6

Antiparasitic Drug Induces Apoptosis

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Briefly, A375 and SK-MEL-28 cells were treated with 0.625 μM or/and 1.25 μM ABZ for 48 h respectively. Then the total proteins were collected and subjected to 10% SDS–PAGE gel for western blot analysis. For western blot analysis, the following antibody dilutions were used: CDK1 (Santa Cruz, sc-54), Cyclin B1 (Santa Cruz, sc-245), p53 (Santa Cruz, sc-126), p-RB1 (Cell Signaling Technology, 8516), RB1 (Cell Signaling Technology, 9313), Cleaved Caspase-3 (Cell Signaling Technology, 9661), CDK4 (Santa Cruz, sc-238969), Cyclin D (Santa Cruz, sc-8396), phospho Histone H3 (Hunan AiFang biological, Co., Ltd, AF00582) and GAPDH (Santa Cruz, sc-47724).
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7

Quercetin and Green Tea Modulate Cell Cycle Regulators

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Quercetin (>98% pure), and Green tea were obtained from Sigma. The CYCLIN D, cyclin E, CYCLIN A, CDK4, CDK2, CDK6, P21, P27, BCL-XL, BAX, BCL-2, cytocrome c, MCL-1, actin, and GAPDH from Santa Cruz Biotechnology. BECLIN-1 and PI3K class III from Cell Signaling Technology. pJNK from Invitrogen. ATG5-ATG12, ATG7 and LC3I/II from Abcam Inc. Anti-rabbit, anti-mouse, and anti-goat peroxidase–conjugated antibodies from KPL, Inc. The HL-60 cell line, derived from a 36-year-old woman with acute promyelocytic leukemia, was obtained from ATCC, Philadelphia, PA. Cytogenetic analyses of the cell line, during the procedures of this study, identified the same alterations as previously described27 (link) in 100% of metaphases analysed.
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8

Epithelial-Mesenchymal Transition Markers Assay

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Hygromycin, puromycin, zeocin, collagen, fibronectin, and laminin substrates were purchased from Life Technologies. Matrigel was obtained from Corning. Transwell inserts (CLS3422) were purchased from Sigma. Antibodies used in our studies were: Vimentin (1:4000 WB; 1:500 IF; Abcam), E-Cadherin (1:250 IF in 2D culture; 1:50 IF in 3D culture; BD Biosciences), Snail (1:500 WB; Cell Signaling), Slug (1:500 WB; Cell Signaling), Calnexin (1:1000 WB; Enzo), Bim (1:250 WB; Enzo), laminin V (1:50 IF in 3D culture; EMD Millipore), Claudin1 (1:500 WB; Invitrogen), Twist1 (1:500 WB; Santa Cruz), PCNA (1:250 WB; Santa Cruz), CyclinD (1:250 WB; Santa Cruz), and VRK1 (1:1000 WB; Sigma).
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9

Protein Analysis by Western Blotting

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Cells were washed twice with PBS and harvested in RIPA buffer (with 1 mM phenylmethylsulfonyl fluoride, Biosesang, Seongnam, Gyeonggi, Korea). Total protein amounts were measured using the bicinchoninic acid assay (Pierce, Rockford, IL, USA). Appropriate amounts of protein were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis (10–12% gels) and transferred to polyvinylidene fluoried membranes. Membranes were blocked with 10% nonfat dry milk in TBST (50 mM Tris/HCl and 150 mM NaCl)/0.1%Tween 20 and incubated with primary antibodies overnight. The primary antibodies used included those against Smad2/3, Zo-1, ZEB1, Cyclin E, Cyclin D, Keratin 14, EEA1, p67phox, p47phox (Santa Cruz Biotechnology, Dallas, TX. USA), slug, snail, vimentin, AKT, pAKT, p38, pp38, ERK, pERK, pSmad2, pSmad3, p21, p27, Src, LC3, pSrc (Y416), p40phox, pp40phox, GAPDH (Cell Signaling Technology, Beverly, MA, USA), ZEB2, YB-1, FAK, pFAK(Y397) (Abcam, Cambridge, UK), NOX4 (Novus Biologicals, Littleton, CO, USA), and NOX2 (BD Biosciences, San Diego, CA, USA).
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10

Molecular Signaling Pathways in Cancer Cells

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DS was purchased from Sigma-Aldrich (St. Louis, MO, USA). The compound was dissolved in 100% dimethyl sulfoxide (DMSO). A 50 mmol/L stock solution of DS was prepared and stored as small aliquots at –20°C until used. We purchased MTT, DMSO, gelatin, and horseradish peroxidase (HRP)-conjugated anti-mouse and anti-rabbit antibodies from Sigma-Aldrich. Fluorescein isothiocyanate (FITC)-conjugated CD44 and phycoerythrin (PE)-conjugated CD24 antibodies were purchased from BD Biosciences (San Jose, CA, USA). The phospho-specific antibodies anti-p38, anti-AKT, anti-mTOR, and specific antibodies anti-p38, anti-AKT, anti-mTOR, and AKT inhibitor LY294002 were purchased from Cell Signaling Technology (Danvers, MA, USA). HRP-conjugated β-actin, OCT4, proliferation cell nuclear antigen (PCNA), p53, p21, cdc2, cyclin B1, CDK4, cyclin D, CDK2, and cyclin E antibodies were purchased from Santa Cruz Biotechnology (Dallas, TX, USA).
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