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On targetplus non targeting pool d 001810 10 20

Manufactured by Horizon Discovery
Sourced in United States

The ON-TARGETplus Non-targeting Pool #D-001810-10-20 is a set of 20 non-targeting control siRNA duplexes designed for use in RNA interference (RNAi) experiments. The core function of this product is to provide a negative control to help identify off-target effects of other siRNA molecules.

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5 protocols using on targetplus non targeting pool d 001810 10 20

1

Regulation of EMT by LXRα and SNAI1

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Hep3B and Snu449 cells were seeded at a density of 1 × 106 in 15 cm culture dishes and transiently transfected with the indicated siRNA. Cells were transfected at ~80% confluency in serum-free OptiMem (Gibco, Thermofisher Scientific), and Mirus TransIT siQUEST (Mirus Biological, Kem En Tech Diagnostics Nordics, Taastrup, Denmark) as transfection reagent, according to the manufacturer’s guidelines. After 24 h cells were seeded for subsequent experiments at specified densities, as described. Where specified, cells where serum-starved for 16 h and subsequently TGFβ1-treated with or without T0901317 for the indicated time periods at 5 ng/ml and 5 µM, respectively. The used siRNAs were as follows: siControl (ON-TARGETplus Non-targeting Pool #D-001810-10-20, Dharmacon); siLXRα (ON-TARGETplus Human NR1H3 siRNA SMARTpool L-003413-00-0005, Dharmacon); and siSNAI1 (ON-TARGETplus Human SNAI1 siRNA SMARTpool L-010847-01-0005, Dharmacon).
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2

Stat3 Silencing and Proliferation

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The ON-TARGETplus human Stat3 siRNA SMARTpool (L-003544), and the control (ON-TARGETplus Non-targeting Pool, D-001810-10-20) were both purchased from GE Dharmacon Inc (Lafayette, CO). Cells were transiently transfected with siRNA (25 nM) using Lipofactamine 3000 (Life Technologies) according to the manufacturer’s instructions. Forty-eight hours after transfection, Stat3 and its downstream genes were assayed in a pool of cells by Western blotting, and another pool of transfected cells was cultured in 96-well plates for additional 72 h and subjected to CyUANT cell proliferation assay (Life Technologies).
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3

siRNA Transfection Protocol for RPL5, RPL11, and TP53

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Cells were transfected with 20 nM siRNA using Lipofectamine™ RNAiMAX during 6 h in Opti-MEM (Gibco, 31985070) and 18 additional hours in regular DMEM. For RPL5, siRNA 5′-AAGGUUGGCCUGACAAAUUAUUU-3′ sequence was used. ON-TARGETplus non-targeting pool (D-001810-10-20) and SMARTpool: ON-TARGETplus RPL11 siRNA (L-013703-00) were purchased from Dharmacon. Flexitube siRNAs Hs_TP53_8 and Hs_TP53_9 were purchased from Qiagen.
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4

ER Stress Modulates TGF-β1 Expression

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To examine the effects of ER stress on TGF-β1 expression, granulosa-lutein cells were pre-incubated with the ER stress inhibitor TUDCA at 1 mg/mL for 24 h, followed by incubation with an ER stress inducer, 2.5 μg/mL tunicamycin (WAKO, Osaka, Japan) or 0.5 μM thapsigargin (Sigma-Aldrich), for 24 h. The optimal concentrations for the ER stress inhibitor and the ER stress inducers were determined according to our previous studies28 (link), 29 (link). To knock down XBP1(S), siRNA was obtained as the ON-TARGET plus SMART pool human XBP-1 siRNA (L-009552-00-020) from Dharmacon (GE Healthcare, Buckinghamshire, United Kingdom). The non-targeting siRNA control, ON-TARGET plus non-targeting pool (D-001810-10-20), was also obtained from Dharmacon. Granulosa-lutein cells were transfected with 50 nM siRNA for 24 h in Opti-MEM (Invitrogen, Carlsbad, CA, USA) using Lipofectamine RNAiMAX (Invitrogen). After transfection, the medium was removed, and the granulosa-lutein cells were treated with tunicamycin (2.5 μg/mL) for 24 h.
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5

Transient Overexpression and Silencing of NTSR2 and TrkB

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cDNAs encoding NTSR2 and TrkB in pCMV6-XL4 expression vectors were purchased from OriGene Technologies (Herford, Germany). For transient overexpression, cells were transfected using Amaxa Nucleofector 2b (Lonza, Levallois-Perret, France) and the Amaxa Nucleofector Kit-V (Lonza) according to the manufacturer’s instructions. For interference assays, B-CLL cells were transfected using INTERFERin (Polyplus transfection, Illkirch, France). In each transfection, 84 ng siRNA against NTSR2 (ON-TARGETplus Human NTSR2 [23620] siRNA – SMARTpool), or siRNA control (ON-TARGETplus Non-targeting pool D-001810-10-20) (Dharmacon, CO, USA), were used.
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