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6 protocols using pt link machine

1

Immunohistochemical Analysis of IL-17 Receptors in OA

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Cartilage and synovial tissue from end-stage OA patients was collected during total knee replacement surgery. Cartilage was dissected from the tibial plateau. Cartilage and synovial samples were immersed in 10% formalin for 0.5 mm/hour, embedded in paraffin before cutting 5μm sections and baking onto adhesive glass slides. Deparaffinisation and antigen retrieval procedure was performed using a PT Link machine (Dako, Glostrup, Demark) using FLEX TRS antigen retrieval fluid (Dako). Immunostaining was performed using an Autostainer Link 48 machine using the EnVision FLEX visualisation system (Dako) with anti-human IL-17RA, anti-human IL-17RC antibodies (R&D systems, Abingdon, UK) or universal negative control mouse (Dako) (Supplementary Table 1). Antibody binding was visualized by FLEX 3,3’-diaminobenzidine (DAB) substrate working solution and haematoxylin counterstain (Dako) following the protocols provided by the manufacturer. Antibodies were validated in-house to determine the concentration of antibody needed for positive staining with minimal artefact from the tissue. After staining, slides were dehydrated before mounting using Pertex mounting medium (Histolab, Gothenburg, Sweden). Negative controls are provided in Supplementary Figure 1.
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HER3 Immunohistochemical Staining Protocol

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We performed immunohistochemical (IHC) staining for HER3 as previously described [34 (link), 35 (link)]. Briefly, sections of each sample were deparaffinized and antigen retrieval was performed at high pH (PT Link machine, Dako). The sections were then stained with a rabbit monoclonal antibody against HER3/ErbB3 (1:59 dilution; clone D22C5, Cell Signaling Technology Inc., Danvers, MA, USA) using the Dako autostainer Link48 (Dako, CA, USA) and EnVision Flex Mini Kit (Dako), according to the manufacturer’s instructions. Hematoxylin was used as a nuclear counterstain. HER3-high was defined as an IHC score of 3 + or 2 + , and HER3-low/zero was defined as an IHC score of 1 + or 0 in line with the HER2 testing guidelines for gastroesophageal cancer [36 (link)]. The H-score (range, 0–300) was calculated using the following formula: 3X + 2Y + Z, where X, Y, and Z are the percentages of tumor cells showing strong, moderate, and weak staining intensities, respectively [37 (link)] (Additional file 1: Table S1A–D). The specificity of this HER3 IHC staining method was validated by confirming no signal detected with an isotype control antibody. Both positive and negative cell line control slides were also incorporated into HER3 staining to verify the specificity at every batch of staining.
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3

Immunohistochemical Analysis of Liver Tissues

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Mice were sacrificed at 5 weeks, 3 months, or 5 months post-injection. Livers were removed and fixed overnight in 4% formalin, then embedded in paraffin, and cut into 5-μm sections. Immunohistochemistry was performed using the EnVision FLEX Mini Kit (DAKO). Antigen retrieval was done in a PT Link machine (DAKO). The primary antibodies used for immunohistochemistry are rabbit polyclonal anti-FAH (ThermoFisher Scientific, PA5-42049, 1:100), incubated for 120 min, and rabbit polyclonal anti-alpha 1 fetoprotein (Abcam, ab46799, 1:500) and rabbit polyclonal anti-glypican 3 (Abcam, ab186872, 1:800), incubated overnight. Secondary antibody polyclonal goat anti-rabbit-HRP (DAKO, P0448) was incubated for 30 min. Visualization was done with EnVision FLEX DAB+ Chromogen System (DAKO, GV825). After hematoxylin counterstaining for 5 min, slides were mounted and scanned with a Pannoramic Digital Slide Scanner (3D Histech).
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Immunohistochemical Analysis of Collagen Types

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After culture, matrices were embedded in HistoGel, fixed in 4% paraformaldehyde and paraffin wax-embedded for sectioning and staining for human collagen type IV (mouse anti-human collagen IV monoclonal antibody 2150–0121, Bio-Rad, CA, USA) and human collagen type I/III (rabbit anti-human collagen I/III polyclonal antibody 2150–2210, Bio-Rad, CA, USA). After automated antigen retrieval processing (PT Link Machine, DAKO, Denmark), sections were washed three times for five minutes in wash buffer (EnVision Flex Wash Buffer, DAKO, Denmark), blocked for ten minutes in blocking reagent (EnVision FLEX peroxidase-blocking reagent, DAKO, Denmark), washed a further three times, incubated with primary antibody diluted in substrate buffer (EnVision Flex Substrate Buffer, DAKO, Denmark) for one hour at room temperature, washed three times, and incubated with secondary antibody (EnVision FLEX/HRP, DAKO, Denmark) for 30 minutes at room temperature. After three washes, 3,3-diaminobenzidine tetrahydrochloride (DAB) solution (EnVision FLEX DAB, DAKO, Denmark) was added with H&E counterstain. Acellular matrix (consisting of rat type I collagen) was used as a negative control, and normal human kidney was used as a positive control.
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5

Nasal Septum Histological Evaluation

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From each animal the nasal septum was carefully dissected out, subjected to overnight fixation in 4% buffered formaldehyde, dehydrated, and embedded in paraffin. From each septum, series of 3 μm sections (transverse section plan) were obtained from two depth levels, separated by 200 μm. Sets of sections from both depth levels were subjected to standard hematoxylin staining, Periodic Acid‐Schiff (PAS) staining (for goblet cell evaluation), FITC eosinophil granule staining 6, 32, and immunohistochemical (IHC) staining of T lymphocytes. Sections for IHC were subject to Heat‐Induced Epitope Retrieval (HIER, PT‐link machine, Dako Cytomation, Denmark) prior to automated IHC staining (Dako Autostainer Robot, Dako) using a mouse anti‐guinea pig T cell monoclonal antibody (MCA751, clone CT5, AbD Serotec). For quantification, stained sections were digitalized in an Olympus VS‐120 slide scanner. The epithelial area was outlined my manual cursor tracing the histochemical staining for eosinophils, T cells, and PAS were automatically quantified by computerized image analysis (VisiomorphDP, Visiopharm, Denmark).
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6

Immunohistochemical Staining Protocol

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After 60 min incubation in Target Retrieval Solution, High pH (Dako, Agilent), at 98°C in a PT Link machine (Dako), the sections were washed twice with Envision FLEX Washing buffer, followed by incubation with peroxidase blocking reagent for 5 min. After 2 new wash steps, the sections were incubated for 30 min in the primary antibody solution (1:100), followed by 30 min in the secondary antibody solution (EnVision FLEX/HRP). Finally, the sections were incubated for 30 min in diaminobenzidine solution. The counterstaining (nuclei) is done automatically by the Leica ST5010 Autostainer XL. Slides were observed with an Olympus BX61 microscope at 20x magnification and pictures were taken with the Olympus Stream Essentials 1.9 software.
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