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7 protocols using mouse anti aurora b

1

Immunoprecipitation and In Vitro Binding Assays

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For immunoprecipitation, cells were lysed using a sonicator (EpiShear Probe Sonicator, Active motif, 120 W, 20 KHz) in E1A buffer (50 mM Tris-HCl (pH 7.4), 150 mM NaCl, 0.1% NP-40, 1 mM dithiothreitol, 5 mM EDTA) containing protease and phosphatase inhibitors (1 mg ml−1 aprotinin, 1 mg ml−1 leupeptin, 5 mM NaF and 0.5 mM Na3VO4). Protein lysates were immunoprecipitated with indicated antibodies for 12 h at 4 °C under constant rotation. The protein–antibody complex was further incubated with protein A-Sepharose beads (GE Helathcare) for 1 h 30 min at 4 °C and the immune complex were washed and subjected to immunoblotting. For immunoblotting, the following antibodies were used: mouse anti-RSF1 (Upstate, 05-727); rabbit anti-PLK1 (Santa Cruz Biotechnology, sc5585) and mouse anti-Aurora B (BD science, 611083); mouse anti-Flag (M2 Flag sigma, F3165); mouse-Myc (Santa Cruz Biotechnology, sc-40); and mouse HA (Santa Cruz Biotechnology, sc-7392) antibodies. For in vitro binding assays, Flag-PLK1, Myc-PLK1 and HA-Aurora B proteins were immunopurified from mitosis-enriched HEK293T cells. Recombinant proteins of His-PLK1, GST-PLK1, GST-RSF1 and RSF1-V5 were prepared as described in the above. The proteins were incubated for 2 h at 4 °C under constant rotation and beads-bound immune complexes were washed for four times and subjected to immunoblot analysis.
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2

Immunofluorescence and FISH Protocol

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Following cell synchronization, cells were fixed with 4% PFA (Electron Microscopy Services) in PBS for 10 min at room temperature. Cells were then permeabilized by incubation in PBS + 0.5% Triton X-100 for 20 min at room temperature. Cells were then stored in 70% ethanol until use. For immunofluorescence, the following antibodies were used: mouse anti-Aurora-B (BD Bioscience), mouse anti-lamin B (Abcam, ab16048). Cells were rehydrated in PBS + 0.1% Triton X-100 for 30 min and incubated in PBS-T + 5% ultrapure BSA + RNasin for 30 min. Cells were incubated by primary antibody for 1 h at 37°C or 3 h at room temperature. Cells were washed 3 × 5 min with PBS-T and then incubated with secondary antibody for 1 h. Cells were then washed 3 × 5 min with PBS-T. Cells were postfixed with 2% PFA in PBS for 10 min at room temperature. Cells were then blocked in 2XSSC 50% formamide + 5% ultrapure BSA + RNasin for 30 min to 2 h at 37°C. Cells were incubated with FISH probes overnight and washed essentially as described (Sharp et al., 2011 (link)). EU was detected essentially as described (Sharp et al., 2020 (link)).
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3

Synchronized Cell Line Western Blot

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Cell lines were seeded into 6 wells plates and synchronised and released from a thymidine block into medium supplemented with 20 μM STLC. Seven hours later cells were harvested and washed with PBS once followed by lysis in Laemmli buffer. SDS–polyacrylamide gel electrophoresis (SDS–PAGE) and western blotting were performed using the standard Bio-Rad protocols. The nitrocellulose membranes were blocked in TBS/0.1% Tween 20 (TBST) containing 4% milk for 30 min and incubated with the following primary antibodies: mouse anti-INCENP (1:500, Invitrogen—39–2800), mouse anti-Aurora B (1:250, BD Transduction Labs—611,083), mouse anti-α-tubulin (1:10,000, Sigma—T5168), or rabbit anti-GFP (custom made). After washing in TBST, the membranes were incubated in HRP-conjugated secondary antibodies goat anti-mouse (1:2500, Dako—P0447) or goat anti-rabbit (1:2500, Dako—P0448) in TBST-4% milk ECL (Advansta) was used as substrate of HRP and chemiluminescence was measured using an Amersham Imager 600. Uncropped scans of western blots can be found in Supplementary Fig. 7).
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4

Western Blot and Immunofluorescence Antibodies

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The following antibodies were used for western blot procedures: mouse anti-β-tubulin (1:5,000, Sigma T5168), rabbit anti-MICAL1 (1:500, Proteintech Europe 14818-1-AP), rabbit anti-Rab35 (ref. 43 (link)), mouse anti-His (1:2,000, Sigma H1029), mouse anti-GST (1:2,000, BD Pharmingen 554805) and anti-Flag antibodies (1:1,000, Sigma M2 F1804). The following antibodies were used for immunofluorescence experiments: mouse anti-β-tubulin (1:200, DSHB E7), mouse anti-Aurora B (1:200, BD Bioscience 611082), rabbit anti-CHMP4B (1:200, Santa Cruz Biotechnology 82557), rabbit anti-p34-Arc/ARPC2 (1:200, Millipore 07-227). The following secondary antibodies were used: Dylight Alexa 488- and Cy3- and Cy5-conjugated secondary antibodies (Jackson Laboratories) were diluted 1:500.
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5

Antibody and RNAi Protocols for Sgo1 and Mitotic Regulators

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Antibodies used in this study were as follows: Rabbit anti‐hSgo1 (gift from Dr. Hongtao Yu, 1:200 IF), rabbit anti‐hSgo1 (generated in‐house, 1:2,000 WB), mouse anti‐B56a (BD Biosciences 610615, 1:2,000 WB and 1:200 IF), rabbit anti‐GFP (generated in‐house, 1:10,000 WB and 1:500 IF), mouse anti‐GFP (Roche #11814460001, 1:2,000 WB and 1:200 IF), mouse anti‐BubR1(generated in‐house, 1:1,000 WB), rabbit anti‐Kif4a (Bethyl Laboratories A301‐074A, 1:3,000 WT), mouse anti‐PP2A‐C (Millipore clone 1D6 05‐421, 1:1,000 WB and IF), mouse anti‐FLAG M2 (Sigma F3165, 1:10,000 WT), human anti‐CREST (Antibodies Inc, 1:500 IF), mouse anti‐Aurora B (BD Transductions 611083, 1:1,000 IF), rabbit anti‐Borealin (gift from Dr. Sally Wheatley), Smc1 (Bethyl Laboratories A300‐055A, 1:2,000 WB), Smc3 (Bethyl Laboratories A300‐060A, 1:2,000 WB), and GFP‐Booster Atto488 (Chromotek gba488‐100, 1:1,000 IF).
RNAi oligos used in this study were as follows: B56α (Dharmacon 5525), B56γ (Dharmacon 5527), B56δ (Dharmacon 5528), B56ε (Dharmacon 5529), hSgo1 (Silencer Select siRNA s45600, Thermo Fischer Scientific), and WAPL (Silencer Select siRNA s22948, Thermo Fischer Scientific).
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6

Immunofluorescence Analysis of Mitotic Spindle Proteins

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Cells were fixed with 3.7% paraformaldehyde (PFA) for 20 min at room temperature and washed with PBS, and the PFA was quenched with 1 mM NH4Cl for 30 min. Cells were incubated with antibodies or dyes diluted in PBS–10% horse serum–0.1% saponin for 1 h. The primary antibodies used were mouse anti-α-tubulin (Sigma), mouse anti-MPM-2 (Millipore), mouse anti-Incenp (Abcam), mouse anti-Aurora B (BD), rabbit anti-Survivin (Abcam), rabbit anti-kinesin-like protein 1 (anti-MKLP-1) (SC867) (Santa Cruz), and mouse anti-γ-tubulin (Sigma), and the dyes used were wheat germ agglutinin (WGA) (Invitrogen) and DRAQ5 (Biostatus). Coverslips were mounted using Aqua PolyMount (Polysciences Inc.). The total fluorescence signal (integrated density) of Incenp, Survivin, Aurora B, and MKLP-1 divided by the area of each individual cell was quantified using ImageJ. Samples were all imaged using a confocal laser scanning microscope (LSM510 or LSM710; Zeiss) with 405-, 488-, and 633-nm-wavelength excitation lasers and a 63× Plan-Apochromat 1.40-numerical-aperture (NA) 190-mm-working-distance (WD) oil or a 40× C-Apochromat 1.2-NA 280-mm-WD Water objective.
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7

Immunofluorescence and FISH Analysis

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Following transfection as outlined above, the cells were grown on glass slides and fixed in 4% paraformaldehyde. Immunofluorescence was performed using standard procedures with the following antibodies: mouse anti-Aurora B (BD, 1 : 100); mouse anti-H3 phospho-serine 10 (Upstate, 1 : 100); rabbit anti-H3 trimethyl-lysine 9 (Abcam, 1 : 100); and mouse anti-human CenpA (Abcam, 1 : 100). Fluorescence in situ hybridization (FISH) was carried out as described in Moralli and Monaco, 2009.
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