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Nupage bis tris mini gel

Manufactured by Thermo Fisher Scientific
Sourced in United States, United Kingdom

NuPAGE Bis-Tris Mini Gels are pre-cast polyacrylamide gels designed for protein electrophoresis. They are used for the separation and analysis of proteins based on their molecular weight. The gels utilize a Bis-Tris buffer system and are available in various percentage formulations to accommodate different protein size ranges.

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66 protocols using nupage bis tris mini gel

1

Determining Critical Aggregation Concentration of FAM-CGY

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The critical aggregation concentration of FAM-CGY was determined in Milli-Q (MQ) water using pyrene as a probe (n = 3 determinations) at room temperature57 (link). SDS-PAGE was carried out using XCell SurelockTM system (Invitrogen, CA, USA) with precast 12 % NuPAGE® Bis-tris mini gels (Invitrogen, CA, USA) operated at a constant voltage of 200 V in NuPAGE® MES running buffer (Invitrogen, CA, USA). For non-reducing conditions, various concentrations of the peptides were prepared by dilution of the stock solution in MQ water and incubated for 30 min at room temperature. The NuPAGE® LDS sample buffer (4×) (Invitrogen, CA, USA) was added to the peptide solutions and 10 µL of each mixture solution was loaded into individual wells. For the reducing condition TCEP was co-incubated with peptide overnight to disrupt the disulfide bonds. Gels were stained with SilverXpress® Silver Staining Kit (Life Technologies, CA, USA) according to the manufacture’s protocol. SDS-PAGE experiments were repeated with three different batches of peptides and each experiment as performed at least three times.
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2

Western Blot and Immunoprecipitation Assays

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Cells were lysed in RIPA cell lysis buffer containing protease inhibitors (Roche) and phosphatase inhibitors (Sigma). Lysates were sonicated for 1 min and centrifuged at 14, 000 × g for 10 min at 4 °C. Twenty micrograms of proteins were resolved in 4–10% NuPAGE Bis-Tris Mini gels (Invitrogen) and electrophoretically transferred to a nitrocellulose membrane (Invitrogen). The unspecific binding sites were blocked in blocking solution containing 5% milk or bovine serum albumin (BSA) for 1 h at room temperature. Then the membranes were incubated overnight in primary antibodies followed by incubation in secondary antibodies for 1 h at room temperature. The reaction products in the membranes were visualized using an enhanced chemiluminescence Western Blot Detection Kit (Thermo Scientific). For immunoprecipitation experiments, 500 µg of total protein lysates were incubated overnight at 4°C with anti-Flag agarose beads (Santa Cruz). The primary antibodies those against NF-κB p65 (Thermo Scientific); p300 (Abcam); SOD2 (Santa Cruz); total OXPHOS (Abcam) and β-actin (Sigma-Aldrich). The densities of protein bands were quantified using ImageJ software (National Institutes of Health, Bethesda, MD) and normalized to the β-actin band intensity for the same sample.
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3

Quantification of CB1 and SLP2 in Mouse Forebrain

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CD-1 mouse embryos at E13.5 (n=4), E16.5 (n=6) or new-born mice (n=6) were decapitated and forebrains were removed. Crudely purified mitochondrial fractions were prepared as described (Morozov et al., 2013 (link)). 20 μg protein samples were separated using electrophoresis at 210V in 4-12% NuPAGE Bis-Tris mini gels (Invitrogen, Carlsbad, CA, USA) and electrophoretically transferred to PVDF membranes (Bio-Rad Laboratories, Hercules, CA, USA). The membranes were subsequently immunoblotted with anti-CB1-L31 (made-in-Guinea pig; Frontier Science Co. Ltd, Japan; 1:400) and anti-SLP2 (made-in-rabbit; 1:200; Santa Cruz Biotechnology Inc, Santa Cruz, CA, USA). The membranes were counterstained using corresponding donkey anti-Guinea pig (1:5000; Jackson Immunoresearch, West Grove, PA, USA) or goat anti-rabbit (1:3000; Bio-Rad Laboratories, Hercules, CA, USA) horse radish peroxidase conjugates, immersed in Clarity Western ECL Substrate (Bio-Rad Laboratories, Hercules, CA, USA) and exposed to X-ray films during recorded periods. Between the immunoblot procedures, membranes were rinsed and incubated in Restore Western Blot Stripping Buffer (Thermo Scientific; Rockford, IL, USA). Before repetitive immunoblots, the membranes were kept in Tris-saline buffer (pH 7.5) at +4°C for 4 days.
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4

Western Blot Analysis of Cell Signaling

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TC32 cells (1.5 × 106) were incubated with drug, collected, washed with PBS, lysed, and boiled in 4% LDS buffer (0.125 M Trizma hydrochloride buffer solution, pH 7.5, and 4% lithium dodecyl sulfate (Sigma-Aldrich). Protein concentrations were determined after diluting the detergent using the bicinchoninic acid (BCA) assay kit (Pierce Protein Biology Products, Carlsbad, CA). Thirty micrograms of protein was resolved on a 4–12% NuPAGE Bis-Tris Mini gels (Invitrogen, Carlsbad, CA) in 1 × 4-morpholinepropanesulfonic acid (MOPS) sodium dodecyl sulfate (SDS) buffer (Invitrogen), and transferred to nitrocellulose (GE Healthcare Life Sciences, Pittsburgh, PA). The membrane was probed with the following antibodies: mouse monoclonal anti-FLI1 (1:1,000, Abcam, Cambridge, MA), mouse polyclonal anti-ACTB (1:1,000, Cell Signaling, Danvers, MA), rabbit polyclonal anti-ENT1 (1:500, Abcam), rabbit polyclonal anti-ENT2 (1:1000, Abcam), and rabbit polyclonal anti-TK1 (1:000, Santa Cruz Biotechnology, Dallas, TX). The protein was visualized by using horseradish peroxidase (HRP)-conjugated secondary antibody and ECL (Amersham, Buckinghamshire, UK).
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5

Western Blot Analysis of Protein Samples

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Cell pellets were lysed by SDS or RIPA solution incorporating an inhibitor of proteinase (Cell Signaling Technology, USA), and total protein was extracted immediately following the manufacturer's instructions. Approximately 20 μg of protein was loaded and separated on NuPAGE bis-tris mini gels (Invitrogen) or SDS polyacrylamide gels and subsequently transferred onto polyvinylidene fluoride (PVDF) membranes (Millipore, USA). Then, the PVDF membranes were blocked after treatment with 5% non-fat milk at room temperature for 1 h. Blocked membranes were mixed with a solution of specific primary antibodies at 4°C overnight. Subsequently, secondary antibodies (Proteintech, China) were added and reacted with the primary antibodies at room temperature for 1 h. After staining via ECL chemiluminescence kit (Millipore), protein bands were detected by a ChemiDoc MP imaging system (Bio-Rad, USA). Table S4 shows the antibodies used for western blot.
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6

Immunoblot Analysis of CYP2A6 Expression

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The expression of CYP2A6 in KI mice was verified by immunoblot
analysis, with use of KO mice as negative controls (Figure S1). Briefly, microsomal proteins were prepared from
liver tissues of 2 month-old male and female mice, as described previously.44 (link) A mouse anti-CYP2A6 monoclonal antibody (OTI1D2;
Invitrogen, Carlsbad, CA) was used to detect CYP2A6. Recombinant human
CYP2A6 (Euprotein, North Brunswick, NJ) was used as the standard for
CYP2A6 protein detection. For immunoblot analysis, NuPAGE Bis–Tris
mini-gels (4–12%) (Invitrogen) were used. Calnexin, a marker
protein for the endoplasmic reticulum, was detected using a rabbit
anti-calnexin monoclonal antibody (clone 10N19; Sigma-Aldrich, St.
Louis, MO) and quantified as a loading control. The secondary antibody
was peroxidase-labeled rabbit anti-mouse IgG or goat anti-rabbit IgG
and was detected with a SuperSignal West Pico PLUS chemiluminescent
substrate (Thermo Scientific, Carlsbad, CA). The intensity of the
target band was determined using a Bio-Rad ChemiDoc XRS + imaging
densitometer with Image Lab Software (Bio-Rad, Hercules, CA).
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7

Protein Extraction and Western Blot Analysis

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Total protein was extracted using Cell Lysis Buffer (#9803, Cell Signaling Technology, USA) containing a protease/phosphatase inhibitor cocktail (#5872, Cell Signaling Technology, USA). Protein samples were centrifuged at 300 g for 10 minutes at 4 °C. After centrifugation, supernatants were mixed with Lane Marker Reducing Sample Buffer (Thermo Fisher Scientific) and heated at 70 °C for 10 minutes. Samples were loaded and separated on NuPAGE Bis-Tris Mini Gels (Invitrogen, USA) under reducing conditions. Samples were then transferred onto a nitrocellulose membrane and blocked in 5% nonfat dry milk in Tris-buffered saline with 0.1% Tween 20 (TBS-T). Cathepsin K, β-actin, NF-κB p65, and phospho-NF-κB p65 were detected with primary antibodies, followed by the appropriate secondary antibodies. Detection was performed using chemiluminescence (Thermo, USA). Band intensities were captured with a digital image scanner and quantified using densitometry software (CS Analyzer 3.0; ATTO, Tokyo, Japan).
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8

Screening Hybridomas for Anti-Adiponectin mAbs

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To screen hybridomas for production of mAbs against recombinant human adiponectin, adiponectin (100 ng/well) was resolved via 12% SDS-PAGE and transferred to Hybond-ECL membranes (Amersham, Arlington Heights, IL, USA). The membranes were blocked with 6% non-fat milk dissolved in TBST buffer (10 mM Tris-Cl [pH 8.0], 150 mM NaCl, 0.05% Tween 20). The blots were probed with hybridoma culture supernatants at 4 °C overnight and incubated with a 1:1,000 dilution of horseradish peroxidase–conjugated goat anti-mouse IgG secondary antibody (Sigma-Aldrich Korea). The blots were developed by using the ECL method (Amersham). To detect adiponectin in human, mouse, and rat serum samples, serum was subjected to gradient SDS-PAGE (4–12%) (NuPAGE® Bis-Tris Mini Gels, Invitrogen), blotted, and probed with purified mAb (5 μg/mL) as the primary antibody, as described above. Mouse and rat serum were obtained via heart puncture of male BALB/c mice and Sprague Dawley (SD) rats (8 weeks old), respectively. Human serum was obtained from a male volunteer (55 years old).
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9

Western Blot Protocol for Protein Detection

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Western blot was done by running samples in 4-12% of NuPAGE Bis-Tris Mini Gels (Invitrogen Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s protocol and blotted onto a 0.45 μm PVDF membrane (Millipore, Billerica, MA, USA). Membrane blocking was performed by using TBS-T (TBS with 0.1% Tween-20; Sigma Aldrich) containing 5% (w/v) dried skimmed milk for 1 hour. The protein was probed by using an appropriate primary antibody overnight at 4°C. After washing the membrane 3 times with TBS-T, an appropriate secondary antibody was added for 1 hour at room temperature. After 2 washes with TBS-T and 2 washings with washing buffer, antigen-antibody complex was visualized by using SuperSignal™ West Pico Chemiluminescent Substrate (Cat.#34080 Thermo Fisher Scientific, Rockford, IL, USA). Magic-Mark™ Western standard from Invitrogen Life Technologies was used to estimate the molecular mass of the detected proteins.
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10

Protein Expression Analysis of 2D and 3D Cell Cultures

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The cell lysates from the 2D cultured system and 3D scaffolds were treated in a PRO-PREP protein extraction solution (iNtRON Biotechnology Inc., Seoul, Korea). Protein samples were loaded onto 4–12% NuPage Bis-Tris Mini Gels (Invitrogen, Carlsbad, CA) and transferred to a polyvinylidene difluoride membrane (Amersham Biosciences, Piscataway, NJ). The blocked membrane was then incubated with primary antibodies against CCAAT/enhancer binding protein α (CEBPα), peroxisome proliferator-activated receptor gamma (PPARγ), acetyl-CoA carboxylase (ACC), fatty acid synthase (FAS), perilipin (PLIN), fatty acid binding protein (FABP4), glucose transporter 4 (GLUT4), acyl-CoA synthetase long chain family member 1 (ASCL1), citrate synthase (CISY), β-actin (Cell Signaling, Danvers, MA) and acyl-CoA dehydrogenase medium chain (ACADM, GeneTex. Irvine, CA). Immunoreactive bands were observed using a chemiluminescent reagent from the Supersignal West Dura Extended Duration Substrate Kit (Amersham Biosciences, Piscataway, NJ). Protein bands were visualized using chemiluminescence (BIORAD Inc., Seoul, Korea and UVITEC Ltd., Cambridge, UK).
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