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Alphaimager hp system

Manufactured by Bio-Techne
Sourced in United States

The AlphaImager HP system is a versatile imaging platform designed for capturing and analyzing high-quality images of various types of gels and blots. It features a high-resolution CCD camera, a bright, uniform illumination system, and advanced software for image acquisition and analysis. The system is capable of detecting a wide range of fluorescent and chemiluminescent signals, making it a valuable tool for a variety of life science applications.

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12 protocols using alphaimager hp system

1

Cell migration assay protocol

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Cell culture was grown overnight in TGY medium supplemented with antibiotics when necessary. The culture was then subcultured in fresh medium until OD600 reached ~ 0.8. Two microliters of prepared culture was spotted in the center of TGY plates (supplementary with appropriate antibiotics) with 0.5% agar. The diameter of cell migration was measured after 12 h of cultivation. Pictures were taken with the AlphaImager® HP system (Alpha Innotech, USA).
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2

Melanogenesis Pathway Analysis in B16-F10 Cells

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B16-F10 cells were treated with test samples in different concentrations to determine levels of melanogenic proteins, such as tyrosinase, TRP-1, TRP-2, and MITF. Besides, B16-F10 cells were treated with 50 μg/mL of test samples for indicated time to determine melanogenesis signaling pathways of p-ERK, p-JNK, and p-CREB. Cells were harvested with ice-cold modified radioimmune precipitation assay buffer, containing a protease inhibitor mixture (Sigma-Aldrich, St. Louis, MO, USA), 50 mM Tris, 150 mM NaCl, 1% NP40, 0.1% sodium dodecyl sulfate, 0.5% sodium deoxycholate, 10 mM phenylmethylsulfonyl fluoride, and 1 mM sodium orthovanadate. Cell lysates were centrifuged at 15,000 × g for 30 min at 4 °C, and the supernatant containing proteins was collected. Protein concentrations were determined by using the Bio-Rad protein assay kit. Equal amounts of protein were separated on the polyacrylamide gel and transferred to nitrocellulose blotting membranes. Membranes were blocked, incubated with the indicated primary antibody, washed, and incubated with the corresponding horseradish peroxidase-conjugated secondary antibodies. Protein bands were visualized with the enhanced chemiluminescence reagent with the AlphaImager HP system (Alpha Innotech, USA). Bands in the immunoblots were quantified using the ImageJ software (National Institutes of Health, Bethesda, MD, USA).
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3

APP and BACE1 Protein Expression Analysis

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After 24 hours of treatment with A1 or vehicle, the M17 cells were harvested in 2 x SDS-PAGE sample buffer. The samples were resolved on 10% SDS-PAGE gels and transferred to PVDF membranes. Then, the membranes were blocked in 5% milk for one hour, followed by incubation overnight at 4°C with the corresponding primary antibody. The primary antibody was anti-APP, which is specific to the APP amino terminal (Abcam, Cambridge, UK), and anti-BACE1 (Sigma Aldrich, St. Louis, MO, USA). On the subsequent day, the membranes were washed three times with TBST buffer for five minutes. The membranes were then incubated in 5% milk (v/v) supplemented with anti-rabbit IgG or anti-mouse IgG for one hour at room temperature. Following incubation with the secondary antibody, the membranes were washed three times with TBST buffer for five minutes. The blots were then visualized via incubation with a SuperSignal West Dura chemiluminescence kit (Pierce Biotechnology, Rockford, IL, USA). Images were obtained via an AlphaImager HP System (Alpha Innotech, San Leandro, CA, USA). β-actin was used as a reference control for protein loading. The bands were quantified using Fluorchem Q SA software (Alpha Innotech, Santa Clara, CA, USA).
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4

PCR Amplification of 16S rRNA Gene

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PCR amplifications were performed in 25 µL volume in 0.2 mL thin-walled PCR tubes (Tarson, India). The PCR mixture contained a final concentration of 10 mM Tris-HCl, pH9.0, 50 mM KCl, 25 mM MgCl2, 0.01% gelatin, 25 p mol concentrations of each primer, 10 mM concentrations of each dNTPs and 1.0 U of Taq DNA polymerase (Bangalore Genei Pvt.Ltd., India). Oligonucleotide primers F-CGGGGTTATGTAGCTTGC and TCGGTACCGAGTATTTCTACCCAACACCT targeting 16srRNA gene were procured from Eurofins Pvt. Ltd. India). The amplification cycles in a Thermal Cycler (Kyratec, USA) was carried out as per the cycling condition described by previous workers [4 (link)]. DNA extracted from D. nodosus reference strain JKS05B and sterile distilled water served as positive and negative controls, respectively. The PCR products were electrophoresed in 0.8% agarose gels, stained with ethidium bromide and visualized and photographed with gel documentation system (Alpha Imager HP system, Alpha Innotech).
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5

Visualizing SOX9 Binding Dynamics

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An EMSA was used to directly visualize monomeric or dimeric binding of SOX9 proteins towards a 36 bp palindromic, oligonucleotide probe with two binding sites spaced 4 bp apart (CC36, GGGATCCTACACAAAGCCGGCTTTGTGTAGGATCCC) Annealing of CC36 was achieved by slow cooling a 100 μM solution in phosphate buffered saline from 95°C to room temperature. A binding reaction typically contained 2 μM oligonucleotide duplex and a 0.5–4 μM concentration of protein in a buffer of 10 mM sodium phosphate pH 6.0, 100 mM NaCl, 5 mM EDTA. After incubation on ice for 30 min, complexes were resolved using a 10% Tris-borate-EDTA gel. After soaking the gel for 15 min in a 1:10000 SYBR-Green-I solution (Invitrogen), visualization was performed using an Alpha Imager HP system (Alpha-Innotech).
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6

Quantitative Analysis of Kidney and Liver KAT Transcripts

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The kidney or liver tissues from three females and three males were grinded to powder in liquid nitrogen. Approximately 50 mg of kidney or liver power was used to extract total RNA using a mirVana miRNA Isolation Kit (Ambion, Inc.) according to the manufacturer's instructions. Total RNA was treated with RNase free DNAase. After heat-inactivation, total RNA was reverse transcribed to the first-strand cDNA using SuperScript™ III First-Strand Synthesis System (Invitrogen) with oligo (dT) 18 primer. The mRNA transcripts of mouse KAT1 and KAT3 were analyzed using RT-PCR. A specific primer pair for KAT1 (Forward: 5′-GAGCTGGAGCTGGTGGCTGC-3′ and Reverse: 5′-GCGCTGCCGATGGTCAGTGT-3′) that amplifies a 152 bp product and specific primer pairs for KAT3 (Forward: 5′-GCTGACCTTTGCGTCAAGCACG-3′ and Reverse: 5′-GGGCCAATGCTCCAGCCGAG-3′) that amplifies a 188 bp DNA fragment were designed and used for PCR amplification. A mouse β-actin gene was used as a control (Forward primer: 5′-GCGGACTGTTACTGAGCTGCGT-3′ and Reverse primer: 5′-TGCTGTCGCCTTCACCGTTCC-3′. Product length=217 bp). The PCR reaction consisted of 2 min at 94 °C, 30 cycles (each cycle: 94 °C for 30 s, 60 °C for 30 s, 72 °C for 1 min), and a final extension at 72 °C for 10 min. All final products were analyzed by 1% agarose gel electrophoresis. The image was digitalized with the Alphaimager HP system (Alpha Innotech).
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7

RAPD Analysis for Genotoxicity Assay

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RAPD can be applied to detect the changes in genomic DNA at the molecular level (Zhang et al., 2016b (link)), so the method was used for the genotoxicity assay in this study. Each polymerase chain reaction (PCR) was conducted in a mixture of 25 µL containing 20 ng genomic DNA, 0.2 µmol/L primer, and 12.5 µL 2 × Taq PCR StarMix. Amplifications were carried out in a DNA thermocycler (TC-XP, Hangzhou Bioer Technology Co., Ltd., China).The PCR program was 94 °C for 5 min, 40 consecutive cycles including 94 °C for 1 min, 37 °C for 1 min, and 72 °C for 2 min, then followed by 72 °C for 10 min as the final extension (Zhang et al., 2016b (link)). After amplification, the PCR products were analyzed by electrophoresis on 1% agarose gel at a voltage of 100 V and a current of 200 mA for 60 min. Then the electropherograms were photographed under an AlphaImager HP system (Alpha2200-5; Alpha Innotech, San Leandro, CA, USA).
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8

Measurement of Copper Transporter Genes

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Total RNA was isolated from cells using the RNAiso Plus (TaKaRaBioTechnology, Dalian, China) following the manufacturer’s protocol. The concentration of total RNA was measured using a Nanodrop 2000 spectrophotometer (Thermo Scientific, Wilmington, DE). Total RNA was reverse transcribed using the PrimeScriptRT Master Mix (TaKaRaBioTechnology), and PCR was performed using Premix Taq (TaKaRaTaq Version 2.0 plus dye, TaKaRaBioTechnology). The mRNA specific primers of CTR1, CTR2, ATP7A and ATP7B were purchased from Genscript Corp. (Nanjing, China). The PCR products were separated by electrophoresis in 2% agarose gels and were detected using the AlphaImager HP system (Alpha Innotech, San Leandro, CA, USA).
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9

PCR Amplification and Gel Electrophoresis

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Each PCR reaction was performed in a mixture of 25 μL containing 20 ng of genomic DNA, 0.2 μmol/L primer, and 12.5 μL 2× Taq PCR StarMix. Amplification was implemented in a gene amplification device (TC-XP, Hangzhou Bioer Technology Co., Ltd., China) programmed for 5 min at 94°C and 40 continuous cycles each consisting of 1 min at 94°C, 1 min at 37°C, and 2 min at 72°C, followed by 10 min at 72°C with a final extension. After amplification, the PCR products were analyzed by electrophoresis on 1% agarose gels in 1× TAE buffer. The electropherograms were photographed under an AlphaImager HP system (Alpha2200-5, Alpha Innotech, USA).
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10

Western Blot Protein Analysis

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Twenty μg crude liver or kidney protein sample was boiled for 5 min in Laemmli sample buffer and then separated by SDS-PAGE at 12% polyacrylamide using a Hoefer SE 260 mini-vertical gel electrophoresis apparatus at 180 V. Separated proteins in the polyacrylamide gel were transferred onto a PVDF membrane (GE Healthcare) in CAPS buffer (10 mM CAPS, pH11.0) at 400 mA using a Hoefer TE 22 transfer apparatus. The membrane was blocked with 5% BSA in 1× PBST (PBS with Tween 20) and incubated with the purified primary antibody (1:500 diluted in 1× PBST with 1% BSA) overnight at 4 °C. The membrane was washed three times for 10 min each in PBST, and incubated with goat anti-rabbit IgG (whole molecule) conjugated with HRP (1:10,000 in 1× PBST with 0.5% BSA) (Sigma-Aldrich) for 90 min. After extensive wash, the membrane was incubated in 2.0 mM 3,3′-diaminobenzidine solution prepared in PBS for 5 min. The image of immunoblot was digitalized with the Alphaimager HP system (Alpha Innotech) and saved as TIF format.
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