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9 protocols using anti mfn1

1

Protein Detection Reagents for Western Blotting and Immunofluorescence

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Detecting reagents used for western blotting include: streptavidin-HRP (Cell Signaling, 3999S, 1:3000), anti-Myc (Cell Signaling, 2276S, 1:3000), anti-V5 (Abcam, ab27671, 1:3000), anti-β actin (GenScript, A00702, 1:3,000), anti-FLAG (GNI, GNI14110-FG, 1:3000), anti-ABCD3 (Sigma, P0497, 1:3000), anti-MFN1 (Cell Signaling, D6E2S, 1:3000), anti-MFN2 (Cell Signaling, D1E9, 1:3000). Antibodies used for immunofluorescence include: anti-MFN1 (Cell Signaling, D6E2S, 1:500), anti-MFN2 (Cell Signaling, D1E9, 1:500), anti-calnexin (Abcam, ab22595, 1:500), anti-EEA1 (Cell Signaling, C45B10, 1:500), anti-GM130 (Abcam, ab52649, 1:500), anti-LAMP1 (Cell Signaling, D2D11, 1:500), anti-ABCD3 (Sigma, SAB4200181, 1:500), anti-ABCD3 (Sigma, P0497, 1:500), anti-catalase (Merck/Millipore, 219010, 1:500), anti-FLAG (GNI, GNI14110-FG, 1:500), anti-FLAG (Proteintech, 20543-1-AP, 1:500), anti-Myc (Cell Signaling, 2276S, 1:500), anti-COX4 (Proteintech, 11242-1-AP, 1:500).
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2

Mitochondrial Dynamics and DNA Damage Markers

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The following primary antibodies were used for western blotting: anti-MFN1 (1:1000, Cell Signaling Technology, 14739S), anti-MFN2 (1:1000, Cell Signaling Technology, 9482S), anti-OPA1 (1:1000, Cell Signaling Technology, 80471S), anti-DRP1 (1:1000, Cell Signaling Technology, 8570S), anti-DRP1 p-S616 (1:1000, Cell Signaling Technology, 3455S), anti-FIS1 (1:1000, Abcam, ab156865), anti-H2A.X p-S139 (1:1000, Cell Signaling Technology 2577S), anti-VDAC (1:1000, Cell Signaling Technology, 4661S), anti-β-tubulin (1:1000, Cell Signaling Technology, 2146S) and horseradish peroxidase-conjugated anti-rabbit IgG H&L (1:10,000, Abcam, ab205718).
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3

Western Blot Analysis of Mitochondrial Proteins

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Proteins from HUVECs were extracted with RIPA lysis buffer (Beyotime, Shanghai, China) containing 1% PMSF (Beyotime, Shanghai, China) and quantified using a BCA protein assay kit (Thermo Fisher Scientific, Waltham, MA, USA). Equal amounts of protein (30 μg) were separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), transferred to 0.22-μm PVDF membranes (Millipore, Billerica, MA, USA), and incubated overnight at 4 °C with specific antibodies: anti-p16, anti-p21, anti-FIS1, anti-SAHH (Abcam, Cambridge, UK), anti-p53, anti-Drp1, anti-OPA1, anti-MFN1, anti-MFN2, anti-DNMT1, anti-DNMT3A, anti-DNMT3B, and anti-GAPDH (Cell Signaling Technology, Danvers, MA) followed by incubation with horseradish peroxidase-conjugated secondary antibodies (Cell Signaling Technology, Danvers, MA). The dilution ratio was 1:1000 for the primary antibodies and 1:10,000 for the secondary antibodies. Protein bands were visualized with Super Signal Chemiluminescence Substrate (Thermo Scientific, Waltham, MA, USA) and GAPDH was used as a control. Images were captured using the FluorChem E system (Protein Simple, Minneapolis, MN, USA) and band densities were quantified using image J software (NIH, Bethesda, MD, USA). The densities of the bands were normalized to that of GAPDH.
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4

Antibody Validation for Mitochondrial Studies

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Commercial antibodies used in this study were anti-Grp78 (Abcam), anti-RLuc (Abcam), anti-Mfn1 (Cell Signaling Technology), anti-Mfn2 (Cell Signaling Technology), anti-Drp1 (BD Bioscience), anti-PDZD8 (PA5-46771; Thermo Fisher Scientific), and anti-β-actin (A2228; Sigma-Aldrich).
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5

Mitochondrial Dynamics Protein Quantification

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Cells at the same confluency were collected and RIPA buffer (Thermo Scientific™, 89900) complimented with protease inhibitors was used to lyse and collect the protein extracts. Following quantification of protein concentrations, 50 μg of total protein from control and patient fibroblasts were loaded on an SDS-PAGE gel. Subsequently, PVDF membranes were used for overnight transfer of the blots. The blots were probed with the following antibodies: anti-MFN2 (Abnova, H00009927-M03; 1:1000), anti-MFN1 (Cell Signaling Technology, D6E2S; 1:1000), anti-OPA1 (BD Transduction Laboratories, 612607; 1:1000), anti-Actin (Sigma, A5316; 1:1000), anti- VDAC1 (abcam, ab14734; 1:1000), anti-HSP60 (Cell Signaling Technology, D6F1; 1:1000). Complimentary horseradish peroxidase conjugated antibodies were used: goat anti rabbit IgG, HRP linked Antibody (Cell Signaling Technology, 7074S) or goat anti-mouse IgG-HRP (Santa Cruz Biotechnology, sc-2055). Blots were treated with the SuperSignal™ West Femto Maximum Sensitivity Substrate (Thermo Scientific™, 34095), and luminescence visualized with an Amersham Imager AI600.
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6

Antibodies and Reagents for Cell Signaling

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The following antibodies used in this study were purchased from the indicated sources: anti-HIF-1α and anti-GAPDH (Santa Cruz); rabbit IgG, anti-GFP, and anti-Flag (Sigma); anti-β-actin, anti-GLUT1, anti-c-Myc, anti-IDH2, anti-H2AFZ, anti-MFN1, and anti-LDHA (Cell Signaling Technology); and anti-IDH1, anti-PFKL, and anti-PDK1 (proteintech). Octyl-α-KG was obtained from Cayman Chemical. DSS was obtained from Sigma. The primers and oligo DNA used in this study are listed in Table S1.
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7

Mitochondrial Protein Expression Analysis

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Total cell extracts or nuclear extracts were separated by SDS-PAGE and transferred to PVDF membranes. The following antibodies were used for immunoblot analysis: anti-HK2, anti-PFKM, anti-LDHa1, anti-PDK2, anti-PDHa1, anti-ATP5B, anti-IDH2, anti-HIF1α, anti-MnSOD, anti-Cu/ZnSOD, anti-Catalase, anti-GR, anti-GRX1, anti-GPX1, anti-PRX3 and anti-TRX2 antibodies and secondary antibody were purchased from Proteintech. anti-MnSOD (acetyl K68) antibody was purchased from Abcam. Anti-β-actin, anti-ComplexV, anti-Lc3B, anti-MFN1, and anti-Fis1 antibodies were from Cell Signaling Technology. Protein expression is visualized on Tanon-5200 Chemi-luminescent Imaging System (Tanon Science Technology).
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8

Western Blot Analysis of Adipose and Liver Proteins

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Western blots of proteins in the adipose and liver were performed as previously described (Berg & Scherer, 2005 (link); Collins et al., 2016 (link); Hotamisligil, 2006 (link)). Primary antibodies for anti-NOV/CCN3, anti-IL-6, anti-pP65, anti-P65, anti-MMP9, anti-MMP2, anti-MT1-MMP, anti-TIMP1, anti-TIMP2, anti-PRDM16, anti-PGC-1α, anti-SOD1, anti-TWIST1, anti-SIRT1, anti-Mfn1, anti-FGF21, anti-CREG1, anti-UCP1, anti-pAKT, anti-AKT, and anti-β-actin were purchased from Cell Signaling Technology, Danvers, MA, USA. The anti-pIR tyr972 antibody was purchased from Millipore, Bedford, MA, USA. The anti-HO-1 antibody was purchased from Enzo Life Sciences, Farmingdale, NY, USA. The secondary antibodies labeled with either IRDye 680 or IRDye 800 were purchased from LICOR Biosciences, Lincoln, NE. Immunoreactivity was visualized and quantified by infrared scanning in the Odyssey system (LICOR Biosciences, Lincoln, NE) and quantified after normalization with β-actin and expressed as arbitrary units (AU).
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9

Western Blot Analysis of Cell Signaling

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The following commercial antibodies were used in the Western blot experiments: anti-p21 (WAF1, Cip1) (#14-6715-81, Invitrogen, Carlsbad, CA, USA), anti-p16INK4α (#PA5-20379, Invitrogen, Carlsbad, CA, USA), anti-p53 (#ab131442, abcam, Cambridge, MA, USA), anti-β actin (#A5441, Sigma-Aldrich, St. Louis, MO, USA), anti-Mfn1 (#14739, Cell Signaling Technology, Danvers, MA, USA), anti-Mfn2 (#9482, Cell Signaling Technology, Danvers, MA, USA), anti-Opa1 (#612606, BD Biosciences, San Jose, CA, USA), anti-VDAC (#4661, Cell Signaling Technology, Danvers, MA, USA), anti-Drp1 (#611112, BD Biosciences, San Jose, CA, USA), anti-GAPDH (#ABS16, Sigma-Aldrich, St. Louis, MO, USA), Ser139_phospho detection antibody H2AX (#PEL-H2AX-S139-T, RayBiotech, Norcross, GA, USA), pan detection antibody H2AX (#PEL-H2AX-S139-T, RayBiotech, Norcross, GA, USA).
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