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6 protocols using 2f peracetyl fucose

1

Inhibiting Fucosylated Structures Synthesis

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To inhibit the synthesis of fucosylated structures, a competitive inhibitor of fucosyltransferases, the 2F-Peracetyl-Fucose (Merck) was used. This inhibitor enters the cell by passive diffusion and is metabolized into a GDP-fucose analog (2F-fucose) to form an inhibitory substrate of fucosyltransferases60 (link). Cells were seeded in 96-well plates or 25 cm² flasks and treated with 500 µM 2F-Peracetyl-Fucose (Merck) solubilized in DMSO in the adequate medium for 3 days, replacing the medium with fresh drug daily. Negative controls were performed by adding the DMSO vehicle only to the culture medium. Afterwards, treated cells were phenotyped by flow cytometry or infected by RVs.
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2

KIAA1324 Mutant Expression and Analysis

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KIAA1324 and its mutants were cloned into the pCMV-3HA vector (Clontech, California, USA) as previously described [13 (link)]. Asp (N) to Gln (Q) amino acid exchange mutation in putative N-glycosylation sites was performed by a DpnI-site directed mutagenesis method using mutagenic primers [21 (link)]. Anti-HA (Santa Cruz Biotechnology, Texas, USA, sc-7392) and anti-PARP (Santa Cruz Biotechnology, sc-8007), anti-caspase-3 (Cell Signaling Technology, Massachusetts, USA, #9662), anti-caspase-7 (Cell Signaling Technology, #9494), anti-phosphor-JNK (Cell Signaling Technology, #4668), anti-JNK (Cell Signaling Technology, #9252), anti-GRP78 (Abcam, Cambridge, United Kingdom, ab21685), anti-PDI, anti-β-actin (Abcam, ab8227), anti-KIAA1324 (Sigma, Missouri, USA, SAB2900912) and α-tubulin (Sigma, T5168) antibodies were used. 2F-Peracetyl-Fucose (Sigma, #344827), SP600125 (Sigma, S5567), SB203580 (Sigma, S8307), U0126 (Sigma, U120), tunicamycin (Sigma, T7765), and doxycycline (Sigma, #24390-14-5) chemicals were used.
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3

Cell Culture and Chemical Treatments

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Human HEK293T, MDA-MB-231, and mouse mammary carcinoma 4T1 cells, were bought from the American Type Culture Collection (Manassas, VA) and maintained in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% fetal bovine serum (FBS, Gibico) at 37 °C under 5% CO2. HCC1806 cells were maintained in RPMI-1640 medium supplemented with 10 % FBS at 37 °C under 5% CO2. All the cells were authenticated using short-tandem repeat profiling, and tested negative for mycoplasma contamination. Compounds MG132 (S2619, Selleck Chemical), cycloheximide (BS168A, Biosharp), Thiamet G (HY-12588, MCE), PUGNAc (A7229, Sigma), tunicamycin (T7765, Sigma), 2F-Peracetyl-Fucose (344827, Sigma), swainsonine (16860, Cayman Chemical), and deoxymannojirimycin (D9169, Sigma) were obtained commercially.
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4

Fucosylation and Sialylation Modulation in Cells

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ℒ-fucose (Sigma-Aldrich, F2252-5G) was used to reconstitute fucosylation in Slc35c1-deficient cells. Inhibition of fucosylation in HDF, HL-60, MDCK and VERO cells was achieved using 2F-Peracetyl-Fucose (Merck Chemicals and Life Science, 344827)22 (link); murine organoids were treated with 2-deoxy-2-fluoro-ℒ-Fucose (Carbosynth, MD06089)23 (link). Sialylation was inhibited using 3Fax-Peracetyl Neu5Ac (Merck Chemicals and Life Science, US1566224)22 (link).
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5

Cartilage Extracellular Matrix and Inflammatory Biomarkers

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3Fax-Peracetyl Neu5Ac and 2F-Peracetyl-Fucose were purchased from Merck. 96-well glass coverslip microplates were purchased from Ibidi. All lectins were purchased from Vector Labs. Human recombinant IL-1β, IL-6 and TNF-α were purchased from Peprotech. RNeasy Mini Kit and Quantifast SYBR Green were purchased from Qiagen. qScript cDNA SuperMix™ was purchased from VWR. RNase inhibitor was purchased from Bioline. PCR primers were purchased from Eurofins. Human MMP-13 ELISA kit was purchased from Abcam. Teflon™ tape, Live/Dead ® staining kit, alamarBlue ® assay, DAPI, TaqMan ® VIC ® -labelled GAPDH primer and TaqMan ® Universal PCR Master Mix, no AmpErase ® UNG were purchased from Fisher Scientific. Primocin was purchased from InvivoGen. TaqMan FAM™ labelled COL1/2 primers were purchased from Thermo Fisher Scientific. All other materials and reagents were purchased from Sigma-Aldrich unless otherwise stated.
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6

Recombinant IgG1 Production in CHO Cells

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5-alkynylfucose was purchased from Carbosynth (Compton, UK), 5-alkynylfucose peracetate from Thermo Fisher scientific (Waltham, MA, USA), 2-deoxy-2-fluorofucose from Cayman Chemical (Ann Arbor, MI, USA) and Dimethyl sulfoxide (DMSO) as well as 2F-peracetyl-fucose were purchased from Merck (Darmstadt, Germany). A CHOK1 cell line producing a recombinant IgG1 was used in this study.
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