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Alexa fluor 546 goat anti rabbit antibody

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Alexa Fluor 546 goat anti-rabbit antibody is a secondary antibody conjugated with the Alexa Fluor 546 fluorescent dye. It is designed to detect and visualize primary rabbit antibodies in various biomedical research applications, such as immunohistochemistry, flow cytometry, and Western blotting.

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8 protocols using alexa fluor 546 goat anti rabbit antibody

1

Immunofluorescent Localization of NF-κB

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The staining was done in cells cultured on coverslips in a 6 well plate. Briefly, cells were fixed in 4% formaldehyde in PBS, blocked with 5% normal goat serum, incubated with rabbit anti-NFκB p65 antibody (Cell signaling) followed by incubation with the Alexa Fluor 546 goat anti-rabbit antibody (Invitrogen) and mounted with Vectashield mounting medium with DAPI (Vector laboratories Inc., Burlingame, CA). The slides were examined under a fluorescence microscope.
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2

Immunofluorescent Localization of NF-κB

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The staining was done in cells cultured on coverslips in a 6 well plate. Briefly, cells were fixed in 4% formaldehyde in PBS, blocked with 5% normal goat serum, incubated with rabbit anti-NFκB p65 antibody (Cell signaling) followed by incubation with the Alexa Fluor 546 goat anti-rabbit antibody (Invitrogen) and mounted with Vectashield mounting medium with DAPI (Vector laboratories Inc., Burlingame, CA). The slides were examined under a fluorescence microscope.
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3

Quantifying DNA Synthesis and Damage in HeLa Cells

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For DNA synthesis studies HeLa cells growing on coverslips in a 6-well plate were treated with relevant drugs (as described in the text) and 15 minutes before fixation 10 µM EdU (Berry & Associates, PY 7562) was added. Cells were fixed with 4% paraformaldehyde for 15 minutes at room temperature. Cells were washed three times with PBS, then permeabilised by treating twice for 10 minutes with PBS-TX (PBS/0.1% Triton X-100) at room temperature. Click reaction mix (0.1 mM 6-carboxyfluorescein TEG-Azide (Berry & Associates, FF 6110), 10 mM Sodium-L-Ascorbate and 2 mM Copper-II-Sulphate) was added to the cells for 30 minutes in the dark. Coverslips were washed three times for 5 minutes with 1% BSA 0.5% Tween in PBS at room temperature in the dark to remove excess copper and azide. Nuclei were stained with DAPI and coverslips were mounted using SlowFade Gold Antifade Reagent (Invitrogen, S36936).
For pSer40/41MCM2 and γH2AX staining cells were treated and fixed as above. Primary anti-pSer40/41MCM2 and anti-γH2AX antibody (Millipore, 05-636) were used together with secondary Alexa Fluor 546 goat anti-rabbit antibody (Life Technologies, A11010) or Alexa Fluor 546 goat anti-mouse antibody (Life Technologies, A11003) respectively.
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4

Immunohistochemical Localization of α2δ1 Calcium Channel Subunit in Retinal Ganglion Cells

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Coverslips containing purified ganglion cells were fixed in 4% paraformaldehyde in 0.01-M PBS [Cedarlane Laboratories, Burlington, ON; 5 min, room temperature (RT)]. RGCs were washed with PBS and treated with normal goat serum blocking solution (Sigma Aldrich, Oakville, ON; 20% in PBS, 30 min, RT). Coverslips were incubated for 18–24 h (4°C) with α2δ1 Ca2+ channel subunit primary antibody (affinity purified rabbit polyclonal, EPFPSAVTIKSWVDK, extracellular epitope; 1:200 in PBS; Alomone Laboratories, Jerusalem, Israel), then washed in PBS. Samples were incubated with Alexa Fluor 546 goat antirabbit antibody (Life Technologies Corp., Burlington, ON) for 2 h (RT), washed with PBS and mounted on microscope slides using VectaShield (Vector Laboratories, Burlington, ON). Cells were not permeabilized with Triton-X (omitted from all immunohistochemical buffers) to limit antibody staining to the cell surface. To determine the selectivity of the α2δ1 antibody, preadsorption control samples were performed in parallel using the supplied control peptide (Alomone Labs). The control peptide was incubated with the α2δ1 antibody (2:1 by weight, 4°C, overnight) prior to adding the suspension to the isolated RGCs. In addition, secondary antibody controls (omission of primary antibody) were performed to ensure selectivity of the Alexa Fluor 546 goat antirabbit for the α2δ1 antibody.
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5

Immunohistochemical Analysis of Phosphorylated ERK

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Fifteen minutes following a seizure, mice (including non-seizure controls) were transcardially perfused with 4% PFA/PBS, brains were harvested, and post-fixed for 2 h at RT (Houser, et al., 2008 (link)). Brains were cryoprotected in 30% sucrose/PBS and sectioned in the coronal plane at a thickness of 30 μm. Tissue slices were mounted on Superfrost Plus microscope slides (ThermoFisher Scientific) and were air-dried overnight at RT. Tissue sections were permeabilized with PBS-Tx and blocked for 1 hr at RT with 10% goat serum. pERK antibodies were diluted (1:500, Cell Signaling) in 1% goat serum in PBS-Tx and incubated overnight at 4°C. Tissue sections were rinsed thoroughly and incubated for 1 h at RT with Alexa Fluor 546 goat anti-rabbit antibody (1:500, Life Technologies), washed and mounted with Fluoromount-G antifade solution (Southern Biotechnology). Images were acquired using a Zeiss Z1 microscope equipped with an ORCA-Flash 4.0 digital camera (Hamamatsu) and Neurolucida software (MBF Bioscience).
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6

Quantifying Apoptosis in Skin Cells

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To test apoptosis in skin cells, tissue sections on immunohistochemistry (IHC) FLEX microscope slides (Dako Denmark, Glosturp, DK) were incubated with a cleaved caspase-3 antibody (#MAB835; RD Systems Donji, Kneginex, HR) at 4 °C overnight in a wet chamber. The next day, the primary antibody was removed, slides were washed in PBS and incubated with Alexa Fluor™ 546 goat anti-rabbit antibody (#PA5-16891; Thermofisher Scientific, Waltham, US) at room temperature for 1 h. After incubation, the secondary antibody was removed, the slides were washed in PBS and incubated with 4′,6-diamidino-2-phenylindole (DAPI) for 1 min. After another washing step, slides were mounted (Fluoromount-G, SouthernBiotech, Birmingham, US) covered (Menzel-Gläser Coverslips, Thermofisher Scientific, Waltham, US) and stored at 4 °C. To quantify caspase-3+ cells, 4 fields of view (FOV) per slide have been counted using an Olympus AX70 microscope (Olympus, Tokyo, JP). Pictures were obtained via Spot RT3 camera (Visitron Systems GmbH, Puchheim, DE) and MetaMorph software (Molecular Devices, San Jose, US).
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7

Evaluating Beta-Cell Proliferation and Apoptosis

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To evaluate β-cell proliferation, 10% formalin-fixed paraffin-embedded sections from each mouse were immunostained with guinea pig anti-insulin antibody (1:100; catalog no. ab7842; Abcam, Cambridge, MA) and rabbit anti-Ki67 antibody (1:100; catalog no. ab15580; Abcam) as primary antibodies. Alexa Fluor 488 goat anti-guinea pig antibody (1:200; catalog no. ab150185; Abcam) and Alexa Fluor 546 goat anti-rabbit antibody (1:200; catalog no. A11035; Thermo Fisher Scientific), respectively, were used as secondary antibodies. For visualization of nuclei, 4’,6-Diamido-2-phenylindole (DAPI) (Prolong Gold antifade reagent with DAPI; Invitrogen, Carlsbad, CA, USA) was used. To evaluate β-cell apoptosis, the DeadEnd™ Fluorometric TUNEL System (Promega, Madison, Wisconsin, USA) was combined with insulin and DAPI immunostaining. The ratio of insulin/Ki67/DAPI co-positive cells to total insulin-positive cells as a measure of proliferation and the ratio of insulin/TUNEL/DAPI co-positive cells to total insulin-positive cells as a measure of apoptosis were calculated for 50 islets in each mouse, as previously reported (20 (link)).
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8

Immunofluorescence Staining of Adherent Cells

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Adherent cells plated on Lab-Tek Chamber slide (Thermo Fisher Scientific) were washed with PBS and fixed in 4% PFA for 15 min. The slides were blocked for 1 hour with 5% goat serum and 1% BSA in PBS. Primary antibodies were added to the cells and incubated at 4 C overnight. Alexa Fluor 546 goat anti-rabbit antibody (Thermo Fisher Scientific, 1:300) was used as the secondary antibody. Coverslips were then mounted on the slides using VECTASHIELD Mounting Medium with DAPI (Vector Laboratories). Primary antibodies included antibodies against YAP (Cell Signaling Technology, #14074, 1:100) and phospho-STAT3 (Tyr705; Cell Signaling Technology, #9145, 1:100).
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