The largest database of trusted experimental protocols

8 protocols using ab155938

1

Immunohistochemical Analysis of Rac and p-Src

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemistry was used to measure the levels of Rac and p-Src in the cells. After PBS washing, rehydrated culture dishes were incubated with primary antibodies against Rac (ab155938) and p-Src (ab40660) purchased from Abcam (Tokyo, Japan) diluted at 1:100 in Ab Diluent (Dako ChemMate; Dako, Japan) overnight at room temperature. For staining with Alexa Fluor 488 anti-rabbit IgG (Invitrogen, Carlsbad, CA, USA), secondary antibodies were diluted at 1:200 in Ab Diluent and added for 60 min at room temperature in the dark. Digital images were taken on a BIOREVO microscope equipped with a confocal microscopy system (BZ-9000, Keyence, Japan) as described previously28 (link).
+ Open protocol
+ Expand
2

Protein Interaction Analysis via IP-MS

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunoprecipitation (IP) and co-immunoprecipitation (Co-IP) were performed using Pierce Classic Magnetic IP/Co-IP Kit (Thermo Fisher Scientific, Grand Island, NY, USA) according to the manufacturer’s directions. Briefly, whole cell protein was extracted using cell lysis buffer for IP (Beyotime, Shanghai, China) supplemented with PMSF (Beyotime) and immunoprecipitated with GADD45g antibody (sc393261, Santa Cruz Biotechnology, Santa Cruz, CA, USA, 1 µg per 200 µg of total protein). For Mass spectrometry assay, the elution products were separated by SDS-PAGE and stained with Pierce™ Silver Stain for Mass Spectrometry Kit (Thermo Fisher). The bands were cut from the silver-stained gel and analyzed via liquid chromatography tandem mass spectrometry (LC-MS/MS) in Shanghai Applied Protein Technology (Shanghai, China). For Western blot analysis, the antibodies used are as following: anti-GADD45g (sc393261, Santa Cruz, 1:500 dilution), anti-RAC2 (ab191527, Abcam, Cambridge, MA, USA, 1:1000 dilution) and anti-RAC1 (ab155938, Abcam, 1:1000 dilution).
+ Open protocol
+ Expand
3

Western Blot Analysis of Cell Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
WB was performed as previously described by Zou et al.19 (link)
In the present research, the following primary antibodies were adopted: anti-MUC1 (1:1,000), anti-RhoA (1:1,000, 2117, Cell Signaling Technology, USA), anti-CCD42 (1:1,000, ab187643, Abcam), anti-Rac1 (1:1,000, ab155938, Abcam), and anti-GAPDH (1:1,000, 5174, Cell Signaling Technology).
+ Open protocol
+ Expand
4

Immunoblotting Analyses of HMGB1, Rac1, and Cdc42

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunoblotting was done as standard procedures. Cell lysates was separated using SDS-gel electrophoresis and transferred onto PVDF membranes. They were blocked with 5% BSA and incubated with specific antibodies. The following primary antibodies were used: HMGB1 (1:1000; ab5662; Abcam, Cambridge, U.K.), rac1 (1:1000; ab155938; Abcam, Cambridge, U.K.), and cdc42 (1:1000; ab64533; Abcam, Cambridge, U.K.). All Western blots shown were representative results obtained from at least three independent experiments, and all results were analyzed by Image J.
+ Open protocol
+ Expand
5

Exosome Protein Characterization Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells or exosomes were harvested and lysed in RIPA buffer (50 mM Tris-HCl, pH 7.4, 150 mM NaCl, 1% Triton X-100, 1% Na deoxycholate, 0.1% SDS, 1 mMEDTA) supplemented with complete protease inhibitor cocktail (Sigma-Aldrich). Lysates were centrifuged at 12,000 g for 30 min at 4°C to remove insoluble material, after which protein concentrations were determined using a Bradford assay kit using bovine serum albumin (BSA) as a standard according to the manufacturer's instructions. Proteins were resolved on SDS-polyacrylamide gels, and then transferred to a polyvinylidene difluoride (PVDF) membrane. After blocking with 5% (w/v) fat free milk, the membrane was stained with the corresponding primary antibodies followed by incubation with the appropriate secondary HRP-conjugated antibodies. The membrane was incubated with the following primary antibodies: anti-CD63 antibody (Abcam, ab134045), anti-TSG101 antibody (Abcam, ab125011), anti-ALIX antibody (Abcam, ab88388) and anti-CAV1 antibody (Abcam, ab2910), anti-ARF6 antibody (Abcam, ab131261), anti-Rac1 antibody (Abcam, ab155938), anti-CLTC antibody (Abcam, ab21679), anti-GAPDH (Cell signaling).
+ Open protocol
+ Expand
6

Western Blot Analysis of Cell Lysates

Check if the same lab product or an alternative is used in the 5 most similar protocols
Transfected cells were cultured for 2 days, then collected and lysed by vortexing with acid‐washed glass balls for 2 min, then placed on ice for 2 min; this was repeated 10 times. The supernatant was gathered after 30 min of centrifugation at 12,000 rpm, and protein concentration measured with NanoDrop (Thermo-Fisher Scientific). Protein (20 μg) was loaded onto 10% SDS-PAGE gels for 1.5 h, then transferred onto polyvinylidene difluoride membranes for 1 h, followed by blocking for 2 h in non-fat milk (5%) in Tris-buffered saline solution containing 0.1% Tween‐20, at normal atmospheric temperature. We then probed the membranes overnight at 4 °C with primary antibodies for Vimentin (1:1000, ab137321, Abcam), GAPDH (1:1000, ab9485, Abcam), N-cadherin (1:1000, ab76057, Abcam), E-cadherin (1:1000, ab231303, Abcam), β-actin (1:1000; sc-47778, Santa Cruz), and RAC1 (1:1000, ab155938, Abcam). We added horseradish peroxidase‐conjugated secondary antibody (anti‐mouse, 1:2000, Santa Cruz) for 2 h at normal atmospheric temperature and visualized protein bands using ECL chemiluminescence detection kit (Thermo-Fisher Scientific).
+ Open protocol
+ Expand
7

Western Blot Analysis of Kidney Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
For western blotting, kidney tissues or podocytes were extracted and quantified. The protein samples were then boiled at 95 °C for 10 min and separated on a 6–12.5% sodium dodecyl sulfate-polyacrylamide gel electrophoresis gel, and subsequently transferred onto a polyvinylidene fluoride (PVDF) membrane. The membrane was then incubated with primary antibodies overnight at 4 °C, followed by incubation with the corresponding secondary antibodies for protein expression visualization. Primary antibodies were used as follows: NPHS2 antibody (1:500, 20384-1-AP, Proteintech), phosphorylated Nephrin antibody (1:10000, ab80299, Abcam), Active Caspase-3 antibody (1:500, A11021, ABclonal), WT1 antibody (1:1000, A2446, ABclonal), β-actin antibody (1:3000, AB0035, Abways), Bax antibody (1:500, 380709, ZENBIO), RAC1 antibody (1:1000, ab155938, Abcam), β-tubulin antibody (1:3000, AB0039, Abways), OLR1 antibody (1:500, 11837-1-AP, Proteintech), SR-A1 antibody (1:500, 382017, Zenbio), CD36 antibody (1:500, 381350, Zenbio), IGF-1R antibody (1:50, sc-81464, Santa Cruz).
+ Open protocol
+ Expand
8

Hippocampal Protein Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The hippocampus on both sides were lysed and homogenized in RIPA lysis buffer containing phenylmethylsulfonyl uoride immediately. After protein concentration assayed with the BCA kit, Total protein samples were separated by 12 % sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene di uoride (PVDF) lters. Membranes were probed with antirat monoclonal antibodies raised in rats against MFG-E8 (Abcam, ab9324), Rac1 (Abcam, ab155938) and LC3 (Abcam, 192890), overnight at 4℃. On the second day, the membrane were washed three times using PBS with 0.1% Tween20, reacted with HRP-conjugated a nipure rabbit Anti-rat IgG (H+L) (Abcam, ab6734) for two hours at 22-25℃. The integral optical density (IOD) of each band was measured using ImageJ software.
Hematoxylin 1a).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!