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5 protocols using α lamin b1

1

Antibody Panel for Flavivirus Detection

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The following antibodies were used: α-strep tag (ab184224, abcam), α-FLAG tag (F7425, Sigma), α-V5 (A190–120A, Bethyl), α-tubulin (T6199, Sigma), α-WNV capsid (abcam, ab21673), α-WNV capsid (Genetex, GTX131947 ), α-WNV capsid (Sigma, SAB3500912), α-DENV capsid (Genetex, GTX103343), α-ZIKV capsid (Genetex, GTX133317), α-fibrillarin (Thermo Fisher Scientific, AMSA6771), α-fibrillarin (Cell Signaling Technologies, 2639S), α-DDX55 (Bethyl, A303–027A), α-PYM1 (Novus, NBP2–46366), α-MAGOH (Santa Cruz, sc-56724), α-RBM8A (Sigma, HPA018403), α-AIF (Cell Signaling, 5318S), α-Lamin B1 (Abcam, ab231282). The α-flavivirus glycoprotein (4G2) hybridoma was provided by Dr. M. Diamond (Washington University). Alexa-Fluor fluorescent secondary antibodies were from Life Technologies. HRP-conjugated secondary antibodies (α-mouse or α-rabbit) were from Amersham.
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2

Antibody Panel for Flavivirus Detection

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The following antibodies were used: α-strep tag (ab184224, abcam), α-FLAG tag (F7425, Sigma), α-V5 (A190–120A, Bethyl), α-tubulin (T6199, Sigma), α-WNV capsid (abcam, ab21673), α-WNV capsid (Genetex, GTX131947 ), α-WNV capsid (Sigma, SAB3500912), α-DENV capsid (Genetex, GTX103343), α-ZIKV capsid (Genetex, GTX133317), α-fibrillarin (Thermo Fisher Scientific, AMSA6771), α-fibrillarin (Cell Signaling Technologies, 2639S), α-DDX55 (Bethyl, A303–027A), α-PYM1 (Novus, NBP2–46366), α-MAGOH (Santa Cruz, sc-56724), α-RBM8A (Sigma, HPA018403), α-AIF (Cell Signaling, 5318S), α-Lamin B1 (Abcam, ab231282). The α-flavivirus glycoprotein (4G2) hybridoma was provided by Dr. M. Diamond (Washington University). Alexa-Fluor fluorescent secondary antibodies were from Life Technologies. HRP-conjugated secondary antibodies (α-mouse or α-rabbit) were from Amersham.
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3

Comprehensive Antibody Catalog for Molecular Research

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Primary antibodies used in these experiments were α-Tubulin (Sigma-Aldrich, T5168; Abcam, ab6046 and ab4074), α-A3B (5210-87-13, custom68 (link)), α-Flag (Sigma-Aldrich, F1804), α-Topoisomerase I (Abcam, ab109374), α-Lamin B1 (Abcam, ab16048), α-IgG2a (Sigma-Aldrich, M5409), α-HA (Cell Signaling Technology, 3724S), α-GFP (Abcam, ab290, Lot GR3251545 and GR3270983 for ChIP), α-mCherry (Abcam, ab167453) α-HNRNPUL1 (gift from S. Wilson, University of Sheffield, UK), α-rabbit IgG Isotype Control (Invitrogen, 02-6102, lot RI238244), α-RNA/DNA Hybrid S9.6 (Kerafast, ENH001 or obtained in house from a hybridoma cell line69 (link),70 (link)), α-dsDNA (Abcam, ab27156) and α-gamma-H2AX (Novus, NB100-384). Secondary antibodies used were α-rabbit IRdye 800CW (LI-COR, 827-08365), α-mouse IRdye 680LT (LI-COR, 925-68020), α-rabbit HRP (Cell Signaling Technology, 7074P2 or Sigma-Aldrich, A0545) and α-mouse HRP (Cell Signaling Technology, 7076P2 or Sigma-Aldrich, A8924), Alexa Fluor 488 goat anti-mouse IgG (Invitrogen, A-11029), Alexa Fluor 594 goat anti-mouse IgG (Invitrogen, A-11032), Alexa Fluor 488 goat anti-rabbit IgG (Invitrogen, A-11034), Alexa Fluor 647 goat anti-mouse IgG (Invitrogen, A-21236) and Alexa Fluor 594 goat anti-rabbit IgG (Invitrogen, A-11037).
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4

Western Blot Analysis of Histone Modifications

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Protein extracts obtained as previously indicated (T, Ns, Ni or C), were separated by sodium dodecyl sulfate polyacrylamide gel, electrophoresed by (SDS-PAGE). Briefly, 40 μg of each extract was loaded in a 12% SDS-PAGE and transferred to 0.45 μm nitrocellulose membranes (BIO-RAD). For western blot (WB) assays, membranes were stained with Ponceau S Red staining solution (Sigma-Aldrich) and incubated 1 h with 5% non-fat milk. Then were incubated overnight (ON) with α-TRF-like I (1:2,500), α-TRF-like III (1:1,000), α-EhKMT4 (1:1,000) (Borbolla-Vázquez et al., 2015 (link)); α-H3K27me3 (1:1,000, Cell Signaling Technology), α-H4K20me3 (1:1,000, Abcam), α-Lamin B1 (1:1,000, Abcam), α-actin (1:1,000, Sigma-Aldrich) or α-Myc (1:1,000, Cell Signaling Technology) antibodies and then, incubated for 2 h with the corresponding horseradish peroxidase (HRP) labeled secondary antibodies (1:8,000, Santa Cruz Biotechnology). Protein bands were detected and visualized by chemiluminescence on X-ray films. All experiments were repeated at least three times.
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5

Auxin-Induced H3K9me2/3 Dynamics

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HP1α-AID-sfGFP cells were treated with control media or 1 mM Auxin for 16 hr, then immunostained with α-H3K9me2/3 (Cell Signaling, mouse mAb #5327) and α-Lamin B1 (Abcam ab16048), as described above, and fixed-cell images obtained as above. Lamin B1 stain was used in FIJI to define a nuclear periphery mask, and enrichment was calculated as average intensity within the periphery mask divided by average intensity of the nuclear interior.
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