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4 protocols using ly83583

1

C2C12BRELuc Reporter Cell Line Protocol

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The C2C12BRELuc reporter cell line [41 (link)] was generated by the Inman group and used in this study. In this cell line, the luciferase (Luc) reporter is under the control of the BMP response elements (BRE) of the Id1 gene. C2C12BRELuc were cultivated in culture medium (Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% heat-inactivated fetal bovine serum (FBS) and antibiotics (100 U/mL penicillin and 100 μg/mL streptomycin, all from Biochrom AG, Berlin, Germany). C2C12BRELuc cells were passaged twice per week in a 175 or 225 cm2 cell culture flask. The cultivation media was supplemented with the antibiotic G418 (0.7 mg/mL) to select for the BREluc-positive C2C12BRELuc cells in accordance with previous studies [41 (link)].
C2C1BRELuc cells were sub-cultivated at a ratio of 2.5–5 × 104 cells per mL of culture medium. DMEM, antibiotics, FBS, and trypsin (Biochrom AG, Berlin, Germany) were used in cell cultivation and passaging. To ensure the viability and to calculate cell number, the metabolic activity of cells was calculated through Presto Blue® assay (Invitrogen by Life Technologies Co., Carlsbad, CA, USA). BMP2 was purchased from Osteogenetics (Würzburg, Germany). H89 was purchased from AbCam (Cambridge, UK). Deta NONOate, SNAP, YC-1, LY83583, LDN-193189, and IBMX were purchased from Cayman Chemical (Ann Arbor, MI, USA).
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2

Comprehensive Chemical Reagent Library

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Bafilomycin (11038), BI-6C9 (17265), bisindoylmaleimide III (11072),
chlorgyline (15925), erastin (17754), trifluoromethoxycarbonylcyanide
phenylhydrazone (FCCP; 15218), (ferrostatin (17729), Flt 3 inhibitor (21193),
GKT137831 (17764), idebenone (15475), liproxstatin (17730), LY83583 (70230),
mitoquinol (mitoQ; 89950), Nullscript (16433), PD146176 (10010518), PI3K
inhibitor VIII (10009210), RSL3 (19288), Scriptaid (10572), STY-BODIPY (27089),
2-theonyl trifluoroacetone (TTFA; 15517) and troglitazone (71750) were purchased
from Cayman Chemical (Ann Arbor, MI USA). GSK2795039 (HX18950) was from MedChem
Express (Monmouth Junction, NJ USA). Cisplatin (2251) was from Tocris
(Minneapolis, MN USA). Antimycin A (A8674), (aminooxy)acetic acid
hemihydrochloride (AOA; C13408), apomorphine (A4393), CdCl2 (202908),
8-(4-chlorophenylthio)-guanosine 3’,5’-cyclic monophosphate
(pCPT-cGMP; C5438), CoCl2 (C2644), deferiprone (379409), glutamate
(G5889), glutaminase inhibitor 968 (SML1327), hydrogen peroxide
(H2O2; H1009), 6-hydroxydopamine (6OHDA; H4391),
iodoacetic acid (I4386), myxothiazol (T5580), paraquat (36541), rotenone
(45656), sodium azide (S8032), tert-butyl hydroperoxide (tBOOH; B2633) and all
other chemicals were purchased from Sigma-Aldrich (St. Louis, MO USA) unless
otherwise stated.
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3

Signaling Pathway Modulation Assay

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PAO (Sigma), LY294002 (2-morpholin-4-yl-8-phenylchromen-4-one) (Tokyo Chemical Industry), LY83583 [6-(phenylamino)-5,8-dihydroquinoline-5,8-dione] (Cayman Chemical Company), brefeldin A ((1R,2E,6S,10E,11aS,13S,14aR)-1,13-dihydroxy-6-methyl-1,6,7,8,9,11a,12,13,14,14a-decahydro-4H-cyclopenta [f]oxacyclotridecin-4-one) (Wako Pure Chemical Industries), W-7 [N-(6-aminohexyl)-5-chloro-1-naphthalenesulfonamide hydrochloride] (Wako Pure Chemical Industries), N-ethylmaleimide (1-ethylpyrrole-2,5-dione) (Tokyo Chemical Industry), and propyzamide (Wako Pure Chemical Industries) stock solutions (100 mM) were prepared in 100% DMSO.
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4

Cardiomyocyte Apoptosis Modulation

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AC16 human cardiomyocytes (MilliporeSigma, SCC109) were seeded onto a 96‐well plate at 8000 cells per well in 100 μL of culturing media. Next day, cells were treated with IncuCyte NucLight Rapid Red Reagent (1:500; Sartorius, Ann Arbor, Michigan; 4717) and Caspase‐3/7 Green (1:1000; Sartorius, 4440) in culture medium alone or plus OptiMEM, or plus AMSC‐derived conditioned media, or plus Brachyury transfected AMSC‐derived conditioned media. Concomitantly, 20 μM of LY83583 (Cayman chemical, Ann Arbor, Michigan; 70230) was added. Nucleus positive for Caspase‐3/7 were counted every 2 hours up to 24 hours (IncuCyte S3 Live‐Cell Analysis System, Sartorius). Superoxide dismutase (SOD) activity and total antioxidant capacity of conditioned media were measured using respective kits (Abcam, Cambridge, United Kingdom; ab65354 and ab65329). The concentration/ratio of conditioned medium ranged between 1.69 and 6.05 μg/μL, depending on the protein assay applied. Throughout protocols, the concentration was consistent among groups with equivalent volume of conditioned media loaded per well.
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