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8 protocols using blank disc

1

Antibacterial Activity Evaluation of Phytochemicals

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The antibacterial assay was performed using disc diffusion (Kirby-Bauer) method as described by Chew et al. [15 (link)]. This is a qualitative assay which is commonly performed to evaluate the antimicrobial activity of phytochemicals or extracts. Briefly, the density of bacteria was standardized to 1 × 108 coliform units (cfu)/mL using Miles and Misra technique [18 (link)] and was swabbed onto Mueller Hinton Agar (Oxoid) surface. 1 mg of crude extract or 0.5 mg of fractions were dissolved initially in 100 μL methanol and loaded onto sterile blank disc (6 mm diameter; Oxoid). The discs were then impregnated onto inoculated agar. 30 μg vancomycin (Oxoid) and blank disc loaded with 100 μL methanol without extract or fraction were served as positive and negative controls, respectively. The plates were left at 4 °C for an hour to allow the diffusion of extracts before they were incubated for 16–20 h at 37 °C. Antibacterial activity was indicated when clear inhibition zones observed around the discs. The diameter of the inhibition zones was measured (Fig. 3) and the results were expressed as mean of three independent experiments. The test was repeated three times.

Inhibition zone of fractions exhibit antibacterial activity in disc diffusion assay

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2

Antimicrobial Susceptibility Evaluation of Plant Extracts

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Disc diffusion method for antimicrobial susceptibility testing was carried out according to the standard method by Bauer et al. (1966) [12 (link)] to assess the presence of antibacterial activities of the plant extracts. A bacteria culture was inoculated to the entire surface of Mueller-Hinton agar plate using sterile swab. The plates were dried for 15 minutes and used for the sensitivity assay. The discs were infused with 10 μL (100 μg) plant extract/disc and placed on the Mueller-Hinton agar surface. Each test set comprises ten implanted extract discs, antibiotic controls, chettaphanin I, and negative controls. The standard antibiotic discs were Amoxicillin/clavulanic acid 30 μg, Doxycycline 30 μg, and Sulfa-trimethoprim 25 μg for S. intermedius. Amoxicillin/clavulanic acid 30 μg, Doxycycline 30 μg, and Fosfomycin 50 μg discs were for S. suis. The negative controls, ethanol and water, were saturated onto the blank disc (Oxoid, UK) and applied along the test. Each test plate had four treated discs placed in equidistance to each other. The plates were incubated at 37°C for 24 hours and examined for zone of inhibition (ZOI). Three replicates were carried out for each bacteria isolate. Data were expressed as mean ± standard deviation from three isolates of S. suis and S. intermedius.
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3

Antimicrobial Efficacy of Essential Oils

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Antimicrobial activity of 9 EOs was investigated against 3 bacterial strains using the disc diffusion method as described Clinical & Laboratory Standards Institute (CLSI 2012). The bacterial suspensions were inoculated the entire surface of Muller Hinton Agar (MHA, Sigma®) plates. 10 µl of each EO was impregnated on a steril 6mm diameter blank paper disc and aseptically placed onto the surface of the inoculated plates and incubated for 10 minutes at room temperature. Then, all plates were incubated under 5% CO 2 at 37 °C for 24h to avoid evaporation. Vancomycin (30 µg/disc, Oxoid) was used as a positive control; a blank disc (Oxoid) impregnated with sterile distilled water was used as a negative control for bacterial inhibition. After incubation, the diameter of inhibition zones were measured in mm. Each experiment was done in triplicate.
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4

Antimicrobial Potential of Plant Extracts

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Nutrient Agar (NA), Sabouroud Dextrose Agar (SDA), Aquadest (Brataco), 70% Ethanol (Brataco), FeCl3 (Merck), Wagner reagent, Mayer reagent, Dragendorff reagent, Ammoniak (Merck), Acetic acid anhydride (Merck), NaNO2 (Merck), AlCl3 (Merck), HCl (Merck), Chloroform (Merck), H2SO 4 (Merck), DMSO, immersion oil, Crystal violet (Merck), Safranin, Lugol's iodine, 0.9% NaCl, Blank disc (Oxoid), the antibiotic disk of Nystatin and Amoxicillin, analytical balance (Excellent), oven (Memmert), blender (Phillips), aluminium foil (Klin Pak), autoclave, incubator, vacuum rotary evaporator, Hot plate, and Laminar Air Flow.
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5

Disc Diffusion Assay for Antibacterial Testing

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Disc diffusion assay. The antibacterial test was carried out following the disc diffusion method [40 (link),41 (link)] using the King B nutrient media (KB) [42 (link)]. A bacterial suspension of each tested bacteria was prepared in sterile distilled water adjusted at 106 CFU/mL (OD ≈ 0.2 nm) using a turbidimetry instrument (Biolog, Hayward, CA, USA). Four millilitres of bacterial suspension mixed with soft agar (0.7%) at ratio 9:1 (v/v) were poured over each plate (90 mm diameter). Blank discs of 6 mm (OXOID, Milan, Italy) were then placed over the KB-plate surfaces and about 20 µL from each tested EO concentration at 0.1, 1 and 10 mg/mL was carefully applied over discs. Tween 20 was added to each tested EO concentration at 0.2% for accelerating the oil solubility. Tetracycline (1.6 mg/mL) was used as a positive control. The antibacterial activity was estimated by measuring the diameter of inhibition zone in mm ± SDs around each treated disc compared to the positive control ones.
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6

Antibiotic Susceptibility Assay of E. coli and P. putida

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E. coli DH5α and Pseudomonas putida were precultured overnight in shake flasks containing lysogeny broth (LB) media (10 g/L Bacto tryptone, 5 g/L Bacto yeast extract, and 10 g/L NaCl, pH 7.0) in an orbital shake incubator set to 180 rpm and 37°C for E. coli or 30°C for P. putida. The bacteria were transferred to an LB-agar plate and incubated at r.t. for 30 min. Compounds 3, 4 and Novobiocin were dissolved in sterile water to a concentration of 10 mg/mL and transferred to blank discs (Oxoid) according to Table 1. Polymyxin B, 300 units (Oxoid CT0044), and Tetracycline 30 mg (Oxoid CT0054) disc were purchased from Oxoid. The discs were allowed to dry for 5 min before they were transferred to the LB-agar plate and incubated at r.t. for 1 h followed by incubation overnight at 37°C for E. coli and 30°C for P. putida. All experiments were run in duplicate.
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7

Antimicrobial Activity Screening of Bark Extracts

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For the initial assessment of antimicrobial activity of certain bark extracts, agar diffusion assays were performed. Blank discs (Oxoid, Basingstoke, UK) were incubated with 100 µL of 10 mg/mL bark extracts overnight. The prepared inocula of different bacterial strains were evenly distributed with sterile cotton swabs on Mueller Hinton E agar (MHE) or for C. acnes on Mueller Hinton 2 agar, supplemented with 5% sheep blood (MHF) (Biomerieux, Marcy-l’Étoile, France). Discs containing bark extracts were placed on the inoculated agar plates with sterile tweezers. As positive controls, bacteria-specific antibiotic discs (Oxoid, Basingstoke, UK) were used for aerob bacteria, and Etest® (Biomerieux, Marcy-l’Étoile, France) was used for C. acnes. The agar plates were incubated at 35 °C for 20 h, C. acnes under anaerobic conditions (BD GasPak EZ Container System, Becton Dickinson, Sparks, NJ, USA) with extended incubation of 24–28 h until visible growth could clearly be observed. Diameters of inhibition zones were measured with a ruler and pictures were taken.
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8

Antimicrobial Activity of CQ Release Media

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CQ release
media were collected from the in vitro release study
at predetermined time periods of 1, 6, and 24 h and used for antimicrobial
activity test by the disc diffusion method. CQ release media were
tested on Gram-positive Staphylococcus epidermidis (RSKK 1009 strain) and Gram-negative Escherichia
coli
(ATCC 25922). Cultures were activated in nutrient
broth for 24 h at 37 °C before use. The bacterial concentration
was set at 0.5 McFarland. Then, the bacterial solution was spread
on agar for cultivation. Blank discs (Oxoid) were placed on the cultivated
Petri dish. Then, 10 μL of extract release media collected at
specific times (1 and 6 h) was dropped on Blank discs. Amoxicillin
(antibiotic) discs were tested as positive control groups. Petri dishes
were incubated at 37 °C for 24 h. Then, clear inhibition zones
were measured and recorded as the average of four replicates.
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