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3 protocols using β tubulin 3

1

Immunocytological Analysis of iPSCs and EBs

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Immunocytological analysis of iPSCs and embryoid bodies was as described previously [30 (link)]. Neural rosettes, NPs and neurons were fixed with 4% paraformaldehyde and stained with Pax6 (Covance), Nestin (Covance), MAP2 (AbCam) and β-tubulin III (TUJ1 clone; Covance) antibodies using standard methods.
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2

Molecular Profiling of Stem Cell Differentiation

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TGFβ was acquired from Millipore (GF111). Antibodies used were anti: H3K27me3 (Millipore, 07449), H3K4me1 (Millipore, 07436), H3K4me2 (Millipore, 07030), H3K27me2 (Cell signaling, 9728S), H3K27ac (Abcam, ab4729), H3K4me3 (Abcam, ab8580), SMAD3 (Abcam, ab28379), phospho-SMAD3 (Cell Signaling, mAb9520), SMAD2/3 (BD Bioscience, 610842), ASCL1 (BD Pharmingen, 556604), JMJD3 (raised in the laboratory using amino acids 798–1095), CHD8 was raised in Dr José Carlos Reyes laboratory (32 (link)), β-TUBULIN III (TUJ1, Covance, MMS-435P), GFAP (Dako, z0334), NESTIN (Abcam, ab5968), HuC/D (MP, A21271), DAPI (ThermoFisher, D1306), β-TUBULIN (Millipore, MAB3408), VINCULIN (Sigma, V9131), HA tag (Abcam, ab20084) and MYC tag (Abcam, ab9132).
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3

Immunostaining Tissue Sections: Antibody Panel

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Primary antibodies used to stain tissue sections were aPKC (#610207; Becton Dickinson), BrdU (#347580; BD and ab6326; Abcam), α-Catenin (610193; BD), Chx10 (X1179P; Exalpha Biologicals), CC3 (#9661; Cell Signaling Technology (CST)), Pan-Crb (synthesized using VGARVPPTPNLKLPPEERLI), Ezrin (ab4069; Abcam), GFP (GFP-1020; Aves), Lamin B1 (#9087; CST), Luciferase (ab21176; Abcam), Mitf (#x2398M; Exalpha), Otx2 (ab9566; Millipore), p27 (#610241; BD), Pals1 (07-708; Millipore), Pax2 (PRB-276P; Covance), Pax6 (RBP-278P; Covance), PCNA (#2586; CST), pH3 (#06-570; Millipore), rhodopsin (#1840-RHO; Phosphosolutions), Sox9 (AB5809; Millipore), β-Tubulin III (MMS-435P; Covance), Yap (#4912; CST and ab56701; Abcam), pYap (#4911; CST) and Zo1 (#610966; BD). Secondary antibodies used were Alexa488 conjugated anti-mouse (Life Tech.), chicken (Life Tech), rabbit (Life Tech) and rat (Life Tech) antibodies, Cy3 conjugated anti-rabbit and mouse antibodies (Jackson Immuno Res.) and Cy5 conjugated anti-mouse and rabbit antibodies (Life Tech.).
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