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13 protocols using py701 stat1

1

Quantification of STAT1 Activation

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Whole cell extracts were prepared from tumor material and normal adjacent tissue pulverized under liquid nitrogen as described previously [20 (link)]. Samples were run on SDS-PAGE gels, proteins transferred to poly(vinylidene) difluoride membranes and probed with primary antibodies for STAT1 (#9176, 1:1000, Cell Signaling), pS727-STAT1 (#07-307, 1:1000, Millipore) and pY701-STAT1 (#9171, 1:500, Cell Signaling). For immunodetection, the enhanced chemiluminescence protocol of Amersham (GE Healthcare) was used. Quantification of the abundance of the immunoreactive STAT1 specific band and normalization of different experiments was performed as described [20 (link)].
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2

Comprehensive Western Blot Antibody Panel

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Western blots were performed as described previously (26 ). The following antibodies were used: FIH-1, Grb2, tubulin, GAPDH, Notch1, GADD45α, FLAG (Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), p63α, E-cad, STAT1, pY701-STAT1, Plectin1, HDAC1, (Cell Signaling Technology, Danvers, MA, USA), ASPP2 (Abcam, Cambridge, United Kingdom), and β-catenin (Sigma-Aldrich Corp., St Louis, MO, USA).
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3

Comprehensive Antibody Toolkit for Cellular Analyses

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Antibodies used in MIRA, immunofluorescence, and Western blot assays are as follows: mouse anti-biotin (Sigma-Aldrich, BN-34), rabbit anti-biotin (1:200; Cell Signaling Technology, D5A7), rabbit anti-TFAM (Abcam, ab131607), mouse anti-MRE11 (Abcam, ab214), rabbit anti-cGAS (Novus, NBP1-86761), mouse anti-mitochondria (Abcam, ab3298), pY701 STAT1 (Cell Signaling Technology, 9167), STAT1 (Cell Signaling Technology, 9176, 14995), mouse anti-DNA (EMD Millipore, CBL186), rabbit anti-LC3A/B (Cell Signaling Technology, D3U4C), mouse anti-oxphos (Abcam, ab3601), mouse anti-BrdU (BD Pharmingen, 555627), rabbit anti-pS366 STING (Cell Signaling Technology, 50907), rabbit anti-TMEM173 (STING; Abcam, ab227704), and mouse anti-RAD51C (Abnova, H00005889-M01).
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4

Chlorpyrifos-Induced Neurodegeneration: Mechanisms and Interventions

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Chlorpyrifos (CPF, C9H11CI3NO3PS) was received from Chem Service, Inc., West Chester, PA (cat # S-11459A1). DMSO, glutathione S-transferase and, BHT (3,5-di-tert-butyl-4-hydroxytoluene) were purchased from Sigma (St. Louis, MO, USA). z-VAD-FMK, Z-DEVD-FMK, and Ac-LEHD-AMC were obtained from Cayman chemicals (Ann Arbor, Michigan). Chloromethyl-2’,7’-dichlorofluorescein diacetate (CM-H2DCFDA), JC-1 dye, RPMI 1640, minimal essential medium (MEM), fetal bovine serum, L-glutamine, penicillin and streptomycin were purchased from Invitrogen (Gaithersburg, MD). Antibodies against p-Y701 STAT1, p-S727 STAT1, STAT1, PARP, caspase-3, LC3B, p62 and beclinl were from Cell Signaling Technology (Danvers, MA); anti-NOX-1 and anti-alpha-synuclein (phospho S129) antibodies were purchased from Abeam (Cambridge, MA); and anti-PKCδ, anti-tubulin, anti-Bcl-2, and anti-Bax antibodies were purchased from Santa Cruz Biotech (Dallas, TX). Rat/Mouse Cytochrome c Quantikine ELISA kit was purchased for R&D Systems (Minneapolis, MN). Halt protease and phosphatase inhibitor cocktail (100 x) and SYTOX green dye were purchased from Thermo Fisher Scientific (Waltham, MA). The Cell Death Detection ELSAplus kit was purchased from Roche Molecular Biochemicals (Indianapolis, IN). N-acetyl cysteine (NAC) and TH antibody were purchased from Calbiochem/EMD Biosciences (Gibbstown, NJ).
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5

Immune Checkpoint Protein Analysis

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Western blots were performed using standard reducing 10% SDS-PAGE protocol with following antibodies from Cell Signaling Technology- pY701STAT1, STAT1, IDO and β-actin. BD FACS Aria flow cytometer was used to analyze the expression of MHCI, MHC, IDO and PDL1 using standard surface staining protocol. Results were analyzed in Flow Jo software.
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6

Western Blot Analysis of JAK-STAT Signaling

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A total of 20–30μg of protein was loaded onto 4–12% Bis-Tris gels (NuPAGE, Life Technologies Corporation, Sweden). After transfer, the PVDF membranes were blocked in 5% Blotting Grade Blocker (Bio-Rad Laboratories AB, Sweden) in TBS supplemented with 0.1% Tween-20 (TBST, both from Merck Millipore, Germany) and incubated with the primary antibodies at 4°C overnight. After 1 h incubation with secondary antibodies (HRP-conjugated anti-mouse from Rockland Immunochemicals Inc., #20789 and HRP-conjugated anti-rabbit from Cell Signaling Technology Inc., USA, #7074), the proteins were detected by using an ECL solution (PerkinElmer Inc., Sweden). The following antibodies were from Cell Signaling Technology: STAT1(#9172, 1/1000), p-Y701-STAT1 (#58D6, 1/1000), STAT3 (#79D7, 1/1000), p-Y705-STAT3 (#D3A7, 1/1000), JAK1 (#3332, 1/1000), JAK2 (#3230, 1/1000). Anti-GAPDH antibody (ab9485, 1/5000) was purchased from Abcam; pJAK1 (#sc-16773-R, 1/500), pJAK2 (#sc-16566-R, 1/500)–from Santa Cruz Biotechnology.
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7

Evaluation of STAT3 and STAT1 Phosphorylation

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HepG2 cells were seeded in a 6-well plate at a density of 5 × 105 ml–1 in complete medium and cultured for 12 h. Cells were then pre-treated with compounds (in 0.05% DMSO) or vehicle control in low-FBS medium for 6 h. IL-6 (25 ng/ml) was added to the wells to induce the phosphorylation of STAT3.63 (link), 64 (link) After 30 min, cells were harvested and protein samples were quantified by the Pierce BCA Protein Assay Kit. 30 μg of each protein sample was separated by SDS-PAGE. In the IFN-α-induced comparative assay, HeLa cells were seeded in a 6-well plate at a density of 5 × 105 ml–1 in complete medium and cultured for 12 h. Cells were then pre-treated with compounds (in 0.05% DMSO) or vehicle control in low-FBS medium for 6 h. IFN-α (1000 U/ml) was added to the wells to induce the phosphorylation of STAT3 and STAT1. After 1 h, cells were harvested and proteins samples were quantified. 30 μg of each protein sample was separated by SDS-PAGE. The proteins were transferred to a PVDF membrane, and blocked with 5% non-fat dry milk in TBST for 1 h at room temperature. The membranes were incubated with primary antibodies (pY705-STAT3, pY701-STAT1, STAT3, STAT1 and GAPDH antibodies, Cell Signaling Technology) overnight. After treatment with secondary antibodies, membranes were analyzed with enhanced chemiluminescent Plus reagents (GE Healthcare).
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8

Comprehensive Antibody Validation Protocol

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STAT1, STAT3, pY701‐STAT1, pS727‐STAT1, pY705‐STAT3, pT222‐MK2, MK2, pTpY‐p42/44 (ERK1/2), p42/44 (ERK1/2), IRF1 and MDA5 antibodies were purchased from Cell Signalling Technology (New England Biolabs, Frankfurt a.M., Germany); RIG‐I antibodies were obtained from Cell Signalling Technology or ProSci (Poway, CA, USA); α‐tubulin and TC‐PTP antibodies were purchased from Sigma‐Aldrich.
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9

Phosphorylation of STAT1 in B cells

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Sorted MZ B cells (5 × 105) were left untreated or treated with 10 µg/ml LPS, 10 µg/ml CpG ODN 1826, or 1,000 U IFN-α4 for 1 h. Cells were lysed in IP lysis buffer (300 mM NaCl, 50 mM Hepes, pH 7.6, 1.5 mM MgCl2, 10% glycerol, 1% Triton X-100, 10 mM NaPyrPO4, 20 mM NaF, 1 mM EGTA, and 0.1 mM EDTA) plus freshly added 1 mM DTT, 1 mM PMSF, 10 µl proteinase inhibitor cocktail (Sigma-Aldrich), 1 mM Na3VO4, and 20 mM NaF. Primary antibodies pS727-STAT1 (Cell Signaling Technology) and pY701-STAT1 (Cell Signaling Technology) and STAT1 (made in-house) were used.
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10

Evaluation of EGFR-Signaling Pathway Inhibitors

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Gefitinib was provided by Selleck (ZD1839, Houston, TX, USA). Erlotinib (#S7786) was also provided by Selleck (Houston, TX, USA). The primary antibodies STAT3 (#12640), pY705-STAT3 (9145S), pY701-STAT1 (#9167), STAT5 (#25656) , phospho694-STAT5 (#9351), EGFR (4267S), phospho-EGFR (3777S), JAK2 (#3230), phospho-JAK2 (#3771), AKT (#4685), p-AKT (#4060), c-Myc (#5605), and c-Caspase-7 (#9491) were from Cell Signaling Technology (Danvers, MA, USA). STAT1 (10144-2-AP) was from Proteintech (Wuhan, Hubei, China). Bcl-2 (sc-7382), Bcl-xL(sc-8392) and β-actin (sc-47778) were from Santa Cruz (Dallas, TX, USA). The secondary antibodies were HRP-conjugated anti-rabbit IgG, anti-mouse IgG (Abcam, Cambridge, UK). EGF (AF-100-15-500) was provided by PEPROTECH (Suzhou, China).
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