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152 protocols using runx2

1

Immunofluorescence Analysis of Nuclear RUNX2

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Nuclear RUNX2 expression was analysed using immunofluorescence as described previously.24 The following antibodies were used: RUNX2 (1:400, #12556, Cell Signaling Technology), and secondary antibody (Alexa‐Fluor 488, 1:500, Invitrogen). DAPI (4′,6‐diamidino‐2‐phenylindole) solution was used (Sigma‐Aldrich) for nucleus stains.
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2

Protein Extraction and Western Blot Analysis

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Total protein was extracted from BMMs and C3H10 cells and from the bones of mice used in the OVX experiment using a radioimmunoprecipitation assay lysis buffer (RIPA) (Sigma-Aldrich), and the protein concentration was measured using a bicinchoninic acid protein (BCA) assay kit (EMD Millipore, Bedford, MA, USA). Protein equivalents were separated using 10% SDS PAGE and transferred onto PVDF membranes (EMD Millipore). The membranes were blocked for an hour at room temperature with 5% skim milk in Tris-buffered saline with Tween 20. After incubating primary antibodies overnight at 4 °C, the membranes were nurtured with corresponding HRP conjugated secondary antibodies (Proteintech Group, Chicago, IL, USA.) The bands were visualized employing ECL Luminous Liquid (EMD Millipore). ImageJ software was used to compute the relative grey level of proteins (NIH). Anti-TRAIL was procured from Santa Cruz Bio (Santa Cruz, CA, USA). Anti-CTSK, TRAP, NFATc1, OPG, RUNX2, OCN, RANKL, COL1a, p-P65, P65, p-P38, P38, p-JNK, JNK, p-ERK, ERK, p-IKBα, IKBα, IKKα, IKKβ, and p-IKKα/β were all purchased from Cell Signaling Technology (Danvers, MA, USA).
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3

Protein Extraction and Western Blot Analysis

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Both types of cells were lysed on ice with M-PER Mammalian Protein Extraction Reagent (Thermo Fisher Scientific, USA) supplemented with 10% protease inhibitor cocktail (Roche, Mannheim, Germany) to isolate total protein and then measured by a Pierce™ BCA Protein Assay Kit (Thermo Fisher Scientific, USA) in accordance with the manufacturer’s instructions. Protein samples supplemented with loading buffer in equal proportions were electrophoresed on NuPAGE™ Bis-Tris Protein Gels (Invitrogen, Waltham, MA, USA) and then transferred onto polyvinylidene fluoride (PVDF) membranes. After incubation with 5% skim milk (5% w/v) for 2 h at room temperature, the membranes were co-incubated overnight at 4 °C with the following primary antibodies specific for GAPDH (1:1000; Cell Signaling Technology, USA), Runx2 (1:1000; Cell Signaling Technology, Danvers, MA, USA), Osx (1:1000; Abcam, Cambridge, UK), Ocn (1:2000; Abcam, UK), ELK4 (1:1000; Proteintech, Rosemont, IL, USA), GM130 (1:1000; Proteintech, USA), CD9 (1:1000; Proteintech, USA), and TSG101 (1:1000; Proteintech, USA). Next, the peroxidase-conjugated secondary antibody (1:5000; ZS-GB-BIO, Beijing, China) was utilized to treat the PVDF membranes for 2 h at room temperature. The ECL kit (Thermo Fisher Scientific, USA) was employed to visualize the signals. Densitometry analysis was conducted with ImageJ software.
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4

Immunofluorescence Assay for Apoptosis Markers

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For immunofluorescence assays, cells were fixed with 4% paraformaldehyde for 30 minutes, followed by permeabilization using 0.5% Triton X-100 for 10 minutes. Next, cells were blocked with 5% bovine serum albumin for 1 hour and incubated with primary antibodies against Runx2 (1 : 200, Cell Signaling Technology), OPA1 (1 : 200, Cell Signaling Technology), cleaved caspase 3 (1 : 200, Cell Signaling Technology), LC3II (1 : 200, Cell Signaling Technology), or p-AMPK (1 : 200, Cell Signaling Technology) overnight at 4°C. The next day, cells were incubated with an appropriate secondary antibody (1 : 200, Cell Signaling Technology) for 1 hour at 37°C. Images were acquired using a fluorescence microscope (Olympus DX51, Tokyo, Japan). Apoptosis was detected using a terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL) assay (Roche, Basel, Switzerland) according to the manufacturer's instructions. The apoptosis index was calculated by calculating the percentage of TUNEL-positive cells to total nucleated cells stained by DAPI.
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5

Western Blot Analysis of Epigenetic Regulators

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Western blot analysis was performed according to standard protocol as previously described (Dudakovic, Camilleri, Xu, et al., 2015 (link)). Cells were lysed using RIPA buffer at indicated time points. Proteins were visualized using SuperSignal West Femto Reagent (Thermo Fisher Scientific) and imaged using the ChemiDoc Imaging System (BioRad). Antibodies and concentrations used for western blot analysis were as follows: Brd2 (Cell Signaling; Cat #D89B4 1:1000), Brd4 (Bethyl Labs; Cat #A301–985A; 1:2,000), Runx2 (in house; 1:3,000), Gapdh (Cell Signaling; Cat #51745; 1:5,000), H3K27Me3 (Cell Signaling; Cat #9733S, 1:1,000), H3K27Ac (Millipore; Cat #07–360; 1:1,000), Histone 3 (Millipore; Cat #05–982; 1:10,000).
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6

Investigating Osteoblast Signaling Pathways

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MC3T3 cells were transfected with siRNA and/or stimulated with TNFα (10 ng/mL) for 1 hour. Whole-cell and nuclear lysates were prepared using RIPA buffer and isolation kit, respectively (Thermo Scientific, Rockford, IL, USA). Immunoblotting was carried out as described.(39 (link)) For some of the experiments, MC3T3 cells were preincubated with TNFα (10 ng/mL) for 45 minutes, followed by incubation with Bmp2/Wnt3a (100 ng/mL) for 4 hours. Some of the cells were then incubated with cycloheximide (10 μg/mL) for 3 hours. Nuclear and cytosolic lysates were prepared following the manufacturer’s recommendations (Thermo Scientific), and immunoblotting was carried out as described earlier using antibodies against β-catenin or Runx2 (Cell Signaling Technology, Beverly, MA, USA) according to the manufacturer’s recommendations.(35 (link))
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7

3D PCL Scaffold Osteogenic Differentiation

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3D Biotech PCL scaffolds, Type I Collagen of calf skin, HAp, poly (L-Lysine), and β-actin antibody were purchased from Sigma-Aldrich, Runx2, and RANKL antibodies were purchased from Cell Signaling Technologies, Osteocalcin antibody was purchased from Santa Cruz, and Osterix and ALP antibodies were purchased from Abcam. All chemicals except indicated ones were purchased from Sinopharm Chemical Reagent Co (Shanghai, China). PCL scaffolds were immersed in 75% alcohol overnight before use.
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8

Protein Expression Analysis of Osteoblast Markers

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Cells were lysed in MPER™ (Mammalian Protein Extraction Reagent, Thermo Scientific, Rockford, IL), which was supplemented with cOmplete Protease Inhibitor Cocktail tablets and PhosSTOP Phosphatase Inhibitor Cocktail tablets (Roche, Indianapolis, IN). Protein concentrations of lysates were determined using the BCA assay (Thermo Scientific, Rockford, IL) and proteins were resolved on SDS-PAGE gels and transferred to PVDF membrane (EMD Millipore, Billerica, MA) using standard procedures. Membranes were blocked with SuperBlock™ T20 (TBS) Blocking Buffer (Thermo Scientific, Rockford, IL) and incubated overnight at 4°C in primary antibodies of Runx2 (Cell Signaling, #8486, 1:1000), ALP (Abcam, #ab67228, 1:1000), RANKL (Cell Signaling, #4816, 1:1000), Osteocalcin (Santa Cruz, #sc-30044, 1:500), Osterix (Abcam, #ab22552, 1:500), and β-actin (Sigma-Aldrich, #A1978, 1:5000). Membranes were then incubated with either anti-mouse (Cell Signaling, #7076, 1:2000) or anti-rabbit IgG (Cell Signaling, #7074, 1:2000), HRP-linked secondary antibodies and Chemiluminescented by Pierce™ ECL Western Blotting Substrate (Thermo Scientific, Rockford, IL). Quantification of signals on Western blots was done using National Institutes of Health (NIH) ImageJ Imaging and Processing Analysis Software with signaling intensity normalized to β-actin.
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9

Western Blotting for Protein Analysis

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Western blotting was performed as described previously (Jia et al., 2014 (link)). Primary antibodies against RBP2, NOTCH1, P27, CYCLIN D1, RUNX2, and β-ACTIN (all from Cell Signaling Technology; catalog numbers 3876, 3608, 3686, 2978, 8486, and 4970, respectively) were diluted 1:1,000 and incubated with the blots at 4°C overnight. Horseradish peroxidase-conjugated anti-rabbit secondary antibodies (Cell Signaling Technology) were diluted 1:10,000 and incubated at room temperature for 1 hr.
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10

Western Blot Analysis of Osteogenic Regulators

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Cells were lysed in RIPA buffer supplemented with a proteasome inhibitor (Beyotime). Equal amounts of proteins were separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis and then transferred to a polyvinylidene fluoride membrane (Millipore, Shanghai, China). After blocking in 5% non-fat milk for 2 h, the membranes were incubated overnight at 4 °C with antibodies specific to GAPDH (1 : 1500; Cell Signaling Technology, Shanghai, China), SIRT7 (1 μg/ml; Abcam, Shanghai, China), RUNX2 (1 : 1600; Cell Signaling Technology), COL1A1 (1 : 1000; Abcam), non-phosphorylated (active) β-catenin (1 : 1000; Cell Signaling Technology), or total β-catenin (1 : 1000; Cell Signaling Technology). After washing in TBST four times (5 min each), the membranes were incubated with horseradish peroxidase-conjugated secondary antibodies (anti-mouse or anti-rabbit; Beyotime) for 1 h at room temperature. After washing five times with TBST, we detected proteins using enhanced chemiluminescence blotting reagents according to the manufacturer’s instructions. The immunoreactive bands were detected using an enhanced chemiluminescent detection reagent (Millipore). Signal intensity was measured using the Bio-Rad XRS chemiluminescence detection system (Bio-Rad, Hercules, CA, USA).
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