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9 protocols using sodium citrate

1

Analytical-Grade Reagent Preparation for Spectrophotometric Analysis

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The following chemicals were obtained from various suppliers: o-phthalaldehyde (OPA), disodium hydrogen phosphate, sodium dihydrogen phosphate, and sodium carbonate from Nacalai tesque (Kyoto, Japan); glycine and N-acetylcysteine (NAC) from Sigma (St. Louis, MO, USA); citric acid, sodium citrate, and sodium polyacrylate from Wako (Osaka, Japan); Triton X100 and ethanol (95%) from Sigma (St. Louis, MO, USA); alcohol from Shimakyu’s Pure Chemicals (Osaka, Japan); and hydrochloric acid from Union Chemical Works Ltd. (Taichung, Taiwan). All analytical-grade reagents were used without further purification. Ultra-pure water with a resistivity greater than 18.2 MΩ cm was prepared using a Direct-Q gradient system (Millipore, Milford, MA, USA).
Buffers were prepared by dissolving the following chemicals in deionized water and storing them at room temperature as the stock: borate buffer (0.1 M, pH 8–10 with NaOH), phosphate buffer (0.1 M, pH 6–8 with NaOH), and citrate buffer (0.1 M, pH 4–6 with NaOH). The 20% OPA reagent was prepared by mixing 2 g of OPA in 10 mL of 99% ethanol. The 1% OPA reagent was freshly prepared by dissolving 0.1 g OPA in 10 mL of ultra-pure water and then diluting it to 0.6, 0.5, 0.4, 0.3, and 0.2%.
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2

Probucol-induced Plasma α-Tocopherol Deficiency in Mice

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Plasma α-tocopherol deficiency was induced by treatment with probucol (Wako; Tokyo, Japan) in the diet. Six-week-old C57BL/6J mice were treated with 1% w/w probucol in the diet for 2 weeks. The control group was designated as C57BL/6J mice fed with a standard diet (75 mg/kg of α-tocopherol). After probucol treatment for 2 weeks, a subgroup of the treated mice was fed with a standard diet for 2 weeks. Blood samples were obtained under anesthesia with diethyl ether (Wako; Tokyo, Japan) by cardiac puncture using sodium citrate (Wako; Tokyo, Japan) as an anticoagulant, and then blood samples were centrifuged at 5000 rpm for 5 min at 4°C to remove the plasma and buffy coat [22 (link)].
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3

Breast Cancer MCF-7 Cell Line Characterization

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The human breast adenocarcinoma (MCF-7) cell line was obtained from the Egyptian Holding Company for Biological Products and Vaccines (VACSERA, Giza, Egypt). Ammonium nitrate, magnesium sulfate, potassium nitrate, boric acid, cobalt chloride, cupric sulfate, manganese sulfate, potassium iodine, sodium molybdate, zinc sulfate, citric acid and sodium citrate were purchased from Wako Pure Chemical Industries® (Tokyo, Japan). Calcium chloride, dextrose, potassium hexacyanoferrate II, potassium hexacyanoferrate III and sodium carbonate were obtained from Merck® (Darmstadt, Germany), while potassium phosphate, sodium chloride, ferrous sulfate, Na2-EDTA2H2O, nicotinic acid, pyridoxineHCl, thiamineHCl, Fe-EDTA, 4-morpholineethanesulfonic acid, τ-inositol, sucrose, phytoagar, sodium phosphate, silymarin, triton X-100, 5-bromo-4-chloro-3-indoly-β-d-glucuronide and α-Rhamnase were purchased from Sigma-Aldrich Corp. (St. Louis, MO, USA). 17β-estradiol was purchased from Takeda Chemical Industries Ltd. (Osaka, Japan). Solvents used were of analytical grade unless mentioned and were purchased from Merck, J.T. Backer® (Deventer, The Netherlands) and Theo Seulberger® (Karlsruhe, Germany). Media and supplements for cell cultures were obtained from Gibco®/Invitrogen (Karlsruhe, Germany) and Greiner Labortechnik® (Frickenhausen, Germany).
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4

Transmission Electron Microscopy Sample Preparation

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Fixed samples for electron microscopy were postfixed with 1% OsO4 (Merck Millipore, 1.24505.0001) for 2 h, followed by dehydration with graded ethanol solutions and QY-1 (NISSHIN EM, 310–1), and embedded in Epon812 (TAAB, T026). Ultrathin sections were cut at 70 nm using an ultramicrotome (UC6 or 7; Leica Microsystems., Wetzlar, Germany), stained with 2% uranyl acetate for 30 min and lead citrate (1% lead acetate [TAAB, L021], 1% lead citrate [TAAB, L018], 1% lead nitrate [TAAB, L019], 2% sodium citrate [Wako Pure Chemical Industries, 191–01785]) for 4 min. They were then examined with an HT7700 electron microscope (Hitachi., Tokyo, Japan).
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5

Twitching Motility Observation on Minimal Medium

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Colonies on minimal medium (MM) [0.175% (w/v) K2HPO4 (Wako Pure Chemical Industries, Ltd.), 0.075% (w/v) KH2PO4 (Wako Pure Chemical Industries, Ltd.), 0.015% (w/v) sodium citrate (Wako Pure Chemical Industries, Ltd.), 0.025% (w/v) MgSO4.7H2O (Wako Pure Chemical Industries, Ltd.), 0.125% (w/v) (NH4)2SO4 (Wako Pure Chemical Industries, Ltd.), 0.5% (w/v) glucose, and 1.5% (w/v) agar (KATAYAMA Chemical Industries, Co. Ltd., Osaka, Japan)] (Addy et al., 2012 (link)) plates were examined for twitching motility by placing a Petri dish without its lid on the stage of an inverted microscope (an Olympus CKX41, Tokyo, Japan) equipped with 4× and 10× objectives.
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6

Synthesis and Characterization of Chemical Compounds

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Carbon tetrachloride (CCl4), salicylic acid, cimetidine, allopurinol, and sodium citrate were purchased from Wako Pure Chemical Industries, Osaka, Japan. Iron sulfate (FeSO4) was purchased from Koso Chemical Co., Ltd., Tokyo, Japan. N-acetyl cysteine (NAC) was purchased from Sigma-Aldrich, St. Louis, MO. Melamine was purchased from Nacalai Tesque Inc., Kyoto, Japan.
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7

Cell Cycle Analysis by Flow Cytometry

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Cell cycle distribution was measured by flow cytometry. Collected cells were washed with ice-cold PBS and fixed with 70% ethanol, followed by treatment with stain solution (1% Triton X-100 (Nacalai Tesque), 50 μg/mL propidium iodide (SIGMA), 40 mM sodium citrate (Wako), 100 μg/mL RNase A (Wako)) for 1 h at room temperature in the dark. Cells were then analyzed using a FACSCalibur flow cytometer (BD Biosciences) and data were analyzed using the CellQuest software (BD Biosciences).
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8

Fullerene-Cyclodextrin Nanoparticle Cancer Study

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Fullerene was purchased from Frontier Carbon (Tokyo, Japan) and C60 was used after purification with extraction and silica gel column chromatography. γ-cyclodextrin (γ-CDx), sodium citrate, and HAuCl4 were obtained from Fujifilm-Wako pure chemical industries, Ltd. (Tokyo, Japan). Polyethylene glycol monomethyl ether (PEG, Mw = 2000) was purchased from Sigma-Aldrich (St. Louis, MO, USA). Colon26 cells were maintained in Dulbecco’s Modified Eagle Medium (DMEM) containing 10% fetal bovine serum (FBS) and 1% penicillin-streptomycin (PS) and L929 cells were maintained in DMEM containing 10% FBS, 1% glutamic acid, and 1% PS. Balb/c mouse (4-week-old, male) were purchased from Japan SLC (Shizuoka, Japan). Tumor xenograft mice were established by subcutaneous injection of suspension of Colon26 cells (5.0 × 105 cells/50 μL) toward the back of Balb/c mouse. The animal experiments were performed in accordance with the Guidelines for Care and Use of Laboratory Animals of Hiroshima University and were approved by the Ethics Committee for Animal Welfare of Hiroshima University (accreditation, C21-34).
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9

Bovine Blood Preparation for Oxygen Analysis

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Batches of bovine blood with a hematocrit of 30% were obtained from a local supplier (Miyazaki Beef Provider, Nobeoka, Japan); 3.8% sodium citrate (Wako Pure Chemical Industries, Ltd., Osaka, Japan) and 4000 units of heparin (Fuso Chemical Co., Ltd., Osaka, Japan) were used as anticoagulants. The baseline pO 2 was measured by the blood gas analyzer (i-STAT, 300F; Abbott Laboratories, Chicago, IL, USA) using an analytical cartridge for blood gas (EG6 + cartridge, Abbott Laboratories, Chicago, IL, USA), which estimated the pO 2 to be approximately 40 mmHg in the bovine blood before the experiment.
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