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69 protocols using calci clear rapid

1

Histological Analysis of Bone Samples

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First, samples were fixed using 10% buffered formalin for 24 h, and the specimens were decalcified with Calci-Clear™ Rapid (National Diagnostics, Atlanta, GA, United States, Cat# HS-105) for 1 week. Subsequently, an ascending series of alcohol rinses were used for sample dehydration, and specimens were embedded in paraplast (Sherwood Medical Industries, Deland, FL, USA). Embedded samples were sectioned to a 5 μm thickness with a microtome (Cambridge Instruments, Germany), and slides were stained with hematoxylin and eosin (H&E), Masson-Goldner trichrome (GT), and Van Gieson’s (VG) for microscopic observation (27 (link), 28 (link)). In the VG microscopic images, the new bone area was measured for quantitative analysis with the Image J program (National Institute of Health, Stapleton, NY, United States).
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2

Femoral Damage Grading Protocol

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Resected femurs were fixed in 10% neutral buffered formalin and decalcified in 10% EDTA for 10 days or in rapid decalcifying solution (Calci-Clear Rapid) (National Diagnostics, Atlanta, GA, USA) for 12 h. Tissue sections were from the femoral midline as the most representative area. To evaluate histologic findings, paraffin-embedded tissue sections were stained with hematoxylin and eosin or Safranin-O staining (Sigma-Aldrich, St Louis, MO, USA). Femoral damage was graded from 0 to 5 as: 0, no damage; 1, mild damage with maintaining femoral head articular cartilage and architecture; 2, destruction of the articular cartilage and collapse of the secondary ossification center but with less than one-third of the femoral head showing destruction; 3; destruction of between one-third and two-thirds of the femoral head; 4, destruction of more than two-thirds of the femoral head; and 5, complete or near-complete femoral head destruction [2 (link), 3 (link)].
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3

Multi-tissue Histological Analysis of Bone

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After obtaining micro-CT scans, the samples were fixed in standard formalin solution with 10% neutral buffer for 2 weeks. The fixed sample then underwent a decalcification process using Calci-Clear Rapid (National Diagnostics, Atlanta, GA, USA). Furthermore, dehydration using a graded ethanol series of 70%, 95%, and 100% was performed, and the samples were soaked in xylene and then embedded in paraffin. The mandibular body and molar region were sectioned in the mesial-distal direction, and the distal femur and the condyle were sectioned in the longitudinal direction in series of 3-µm thickness using a microtome (Reichert-Jung, Heidelberg, Germany). The samples were stained with Masson trichrome to discriminate bone from soft tissue. The series of sections were observed using a light microscope (Olympus BX51; Olympus Co., Ltd., Tokyo, Japan) and examined using a slide scanner (3D-Histech, Budapest, Hungary).
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4

Histological Assessment of Tympanic Bullae

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After the rats were euthanized, tympanic bullae were harvested and fixed in 4% paraformaldehyde for 24 h at 4°C, rinsed with PBS, and decalcified in Calci-Clear Rapid (National Diagnostics, Atlanta, GA, United States) for 5 days. The softened bullae were dehydrated and embedded in paraffin. The paraffin-embedded bullae were sectioned into 7 µm longitudinal sections for staining. The sectioned bullae were deparaffinized, rehydrated, and stained with hematoxylin and eosin (H&E) to visualize the ME mucosa.
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5

Histomorphometric Analysis of Bone Regeneration

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Formalin fixed tissues were decalcified using Calci-Clear Rapid (National Diagnostics, 305 Patton Drive Atlanta, GA 30336, USA). After the dehydration procedure, the tissues were embedded in paraffin and were sectioned longitudinally at 4 µm using a fully automated rotary microtome (Leica RM2255, Leica Microsystems, IL, USA). Tissue slides were stained with hematoxylin eosin (H&E) and Masson’s trichrome (MT) stains to visualize newly regenerated bones for the histomorphometric analysis. Images of slides were captured using a microscope (Olympus BX, Tokyo, Japan) equipped with a CCD camera (Polaroid DMC2 digital Microscope Camera, Polaroid) and were evaluated using an i-Solution image program (IMT, Daejeon, Korea) by a single experimental expert. The results are expressed as mean and standard deviation of new bone area (%) (Figure 14).
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6

Histological Evaluation of Mouse Joint Tissues

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Mouse joint tissues were fixed in 4% paraformaldehyde (Sigma-Aldrich, St. Louis, MO, USA), decalcified in histological decalcifying agent (Calci-Clear Rapid; National Diagnostics, Atlanta, GA, USA), trimmed, and embedded in paraffin wax. Sections (7 μm) were prepared and stained with hematoxylin (YD Diagnostics, Yongin, Korea), eosin (Muto Pure Chemicals Co., Ltd., Tokyo, Japan), and Safranin O (Sigma-Aldrich). Cartilage damage was scored as described previously [16 (link)].
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7

Murine Nasal Eosinophil Quantification

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Four mice each of the 4 groups were sacrificed and decapitated 24 hours after the last allergen challenge. The heads were fixed in 4% paraformaldehyde for 3 days at 4℃, washed in running water, decalcified for 3 days with Calci-Clear Rapid (National Diagnostics, Atlanta, GA, USA) at room temperature, dehydrated by passage through a graded alcohol series, and embedded in paraffin block. The blocks were cut into 4-µm-thick sections and stained with hematoxylin and eosin to evaluate the general morphology and number of eosinophils in the lamina propria of the nasal mucosa. The average number of cells was counted in 4 areas around the nasal septa in 50×50-µm areas under a light microscope (×200). The individual who counted eosinophils was blinded to the animals' group assignments.
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8

Histological Evaluation of Joint Inflammation and Cartilage Damage

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Joint tissues were fixed in 10% (v/v) neutral-buffered formalin, decalcified in a histological decalcifying agent (Calci-Clear Rapid; National Diagnostics, Atlanta, GA, USA), embedded in paraffin, and cut into 5-µm-thick sections. The sections were stained with hematoxylin and eosin, as well as Safranin O, to detect proteoglycans. Inflammation was scored using the following criteria: 0 = no inflammation; 1 = slight thickening of the lining, or infiltration of some cells into the underlying layer; 2 = slight thickening of the lining, with infiltration of some cells into the underlying layer; 3 = thickening of the lining, with influx of cells into the underlying layer and cells evident in the synovial space; and 4 = extensive infiltration of the synovium by inflammatory cells. Cartilage damage was evaluated by staining with Safranin O and toluidine blue, and the extent of damage was scored as follows: 0 = no destruction; 1 = minimal erosion (limited to single spots); 2 = slight-to-moderate erosion in a limited area; 3 = more extensive erosion; and 4 = general destruction.
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9

Histological Bone Quantification Protocol

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Specimens were decalcified using decalcifying Solution (Calci-Clear Rapid®, National Diagnostics, Atlanta, GA, USA) and dehydrated in an alcohol series (70%, 80%, 90%, and 100%) before they were embedded in paraffin. After that, the paraffin block was sectioned 3–4 μm thickness using a microtome(Leica® RM2255, Leica Biosystems Inc., Buffalo Grove, IL, USA). Slides were stained with hematoxylin-eosin and Masson’s trichrome and imaged under an optical microscope (Olympus BX51, Olympus Co., Ltd., Tokyo, Japan). New bone areas (%) were determined using an image analysis program (iSolution, IMT, Vancouver, Canada) (Figure 2).
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10

Olfactory Tissue Preparation and Sectioning

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The Sprague-Dawley rats were anesthetized using a mixture of Zoletil and Rompun solution (9:1 ratio, 1 μl/g, i.m.) and then transcardially perfused with cold saline (0.9% NaCl) and fixed with prechilled 4% paraformaldehyde in phosphate-buffered saline (PBS, pH7.4). The OE and OB were post-fixed overnight at 4°C.
Post-fixed OE tissues were treated with a decalcification solution (Calci-Clear Rapid, National diagnostics, GA, USA) for 4 h. After D.W. washing, OE tissues underwent dehydration with ethanol solutions for 2 h (70%, 85%, 95% and 100%), and then soaked in xylene for 4 h, followed by embedding in paraffin over 4 h.
The OB tissues of rat were sunken in 30% (wt/vol) sucrose overnight for cryo-embedding. Tissues were embedded in optimal cutting temperature (OCT) compound (Leica, Germany), and stored at −80°C until use.
The paraffin-molded samples were sectioned (5 μm) with a rotary microtome (Leica, Germany, RM2235), and cryo-embedded OB tissues were serial sectioned using cryostat at 12 μm (Thermo Scientific, Microm HM550). All sliced tissues were attached to the micro slide glasses (Muto Pure Chemicals, Japan).
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