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9 protocols using fp 6500 spectrophotometer

1

Synthesis and Characterization of 2-Bromo-9,9-Dimethylfluorene

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Mesitylene, 2-bromo-9,9-dimethylfluorene and all other chemicals and reagents were purchased from Aladdin Industrial Corporation. THF was distilled under dry nitrogen immediately prior to use. 1H and 13C NMR spectra were measured on a Bruker AV 500 spectrometer in deuterated chloroform or dichloromethane using tetramethylsilane (TMS; δ = 0) as the internal reference. UV-Vis spectra were measured on a JASCO V-570 spectrophotometer. Photoluminescence was recorded on a JASCO FP-6500 spectrophotometer. Thermal transitions were investigated by differential scanning calorimetry using a STA 449 F3 under dry nitrogen at a heating rate of 10 °C min−1. High resolution mass spectrometry was measured on a LTQ-Orbitrap XL high resolution mass spectrometer. X-ray diffraction patterns were recorded on a D8 Advance powder diffractometer using the monochromatized X-ray beam from a nickel-filtered Cu Kα radiation (λ = 1.54183 Å).
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2

Coagulation Pathway Inhibition Assay

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TCT tests for the common coagulation pathway were performed with nh-TBA15/29, di-TBA15/29, Supra-TBA15/29, Supra-TBA15/29-GO, and four commercial anticoagulants (heparin, argatroban, hirudin, and warfarin). Analytical solution containing PBS (pH 7.4), bovine serum albumin (100 μM), inhibitor (100 nM), and human plasma (2-fold diluted) was allowed to react for 15 min, maintained at 37°C for 3 min, and then mixed with thrombin (15 nM). Scattered light intensity at 650 nm was recorded using an FP-6500 spectrophotometer (JASCO, Tokyo, Japan). The TCT was noted as the time at which the differential scattering signal intensity reached the maximum. The measurements were done in triplicates, and a single batch of plasma was used for each set of experiments.
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3

Characterization of ZnO and ZnO/TCNE Films

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The Shimadzu UV-2401 PC spectrophotometer was used to carry out the absorption and transmittance spectra of ZnO and ZnO/TCNE films on the glass/ITO substrates. The surface roughness of ZnO and ZnO/TCNE films surface were evaluated by the atomic force microscope (Nano First-3100) in a tapping mode. XRD (X-ray diffraction) patterns are taken using a Rigaku X-ray diffractometer equipped with CuKα (1.54 Å). Morphological analysis of prepared samples is done using Field Emission Scanning Electron Microscope (FE-SEM, Zeiss-Ultra Plus Gemini Co.). SEM system is also used to obtain cross-sectional images. The photoluminescence (PL) studies of glass/ITO/ZnO/PTB7:PC71BM and glass/ITO/ZnO/TCNE/PTB7:PC71BM films were recorded with an excitation wavelength of 500 nm, Jasco FP-6500 spectrophotometer. Efforts to measure the exact thickness of the TCNE layers gave unreliable results because the TCNE layers were too thin.
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4

Fluorescence Spectroscopy of SPPS Coverslips

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Coverslips were saved after Fmoc protected amino acid addition and after deprotection by piperidine to indicate all stages of SPPS. Coverslips were dried and mounted onto a microscope slide and fluorescence spectra recorded with a JASCO FP-6500 spectrophotometer using a technique that was specifically developed for SPPS coverslips by Zelzer et al.44 (link). Coverslips were angled a 30° from the incident light and exposed to an emission spectra = 270 nm and excitation spectra = 320 nm with a slit width of 20 nm (light source and detector).
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5

Fluorescence-based Monitoring of FMOC Synthesis

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After each coupling
and deprotection stage, samples were taken from the bulk batch after
the methanol washing stage and rinsed in distilled water, followed
by drying under nitrogen. Samples were analyzed using fluorescence
spectroscopy to confirm the attachment of the FMOC-protected amino
acids and removal of the FMOC group during coupling and deprotection
stages. This technique is as described in literature by Zelzer et al.,50 (link) taking advantage of
the fluorescent properties of the FMOC group. Fluorescence spectra
were measured at room temperature using a JASCO FP-6500 spectrophotometer
(JASCO, JPN) with spectra manager software. Samples were attached
to a glass microscope slide inserted into a custom-made rotatable
holder within the spectrophotometer chamber. Samples were orientated
at 30° to the incident light to limit the amount of reflected
excitation light hitting the detector. Excitation of the surface-tethered
FMOC groups was carried out using an excitation wavelength of 270
nm with a slit width of 20 nm. Three spectra were recorded at each
stage of synthesis using three different samples.
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6

Spectroscopic characterization of compounds

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All chemical reagents and solvents were of analytical grade and commercially available. Measurements UV-vis spectra were recorded on Agilent 8453 spectrometer. Fluorescence measurements were carried out using a Jasco FP-6500 spectrophotometer. 1 H NMR spectra were recorded on a Bruker AV III 400 MHz NMR spectrometer. Infrared spectra were recorded using a Bruker Vertex 70 FT-IR spectrometer with KBr pellets.
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7

Calcium Signaling Measurement in Cells

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MDA-MB-231 and SH-SY5Y cells in suspension were loaded with Fura-2 AM (5 µmol/l) through incubation in HEPES buffer solution (HBS) for 30 min at 20 °C and then for 15 min at 37 °C. A spectrophotometer was used to measure fluorescence oscillations for 300 s (FP-6500 spectrophotometer, Jasco, Tokyo, Japan). The temperature was maintained at 37 °C, and magnetic stirring was implemented during the measurements with alternating excitation wavelengths of 340 and 380 nm; the fluorescence emission was detected at 510 nm before each experiment. The 380 nm/340 nm signal was calibrated using the Grynkiewicz et al. method [23 (link)] before each experiment. Briefly, the fluorescence ratio was measured in HBS lacking Ca2+ supplemented with EGTA (1 mM) and in HBS supplemented with ionomycin (300 nM) containing 2 mM Ca2+, the Ca2+ concentration at which Fura-2 is saturated. Maximal and minimal ratios (Rmax and Rmin) were obtained under these two conditions, and the [Ca2+]i values were derived using the following equation:
[Ca 2+]i = Kd (R − Rmin/Rmax − R)(Sf2/Sb2),
R is the experimentally measured ratio, Sf2 is the fluorescence measured at 380 nm in Ca2+-free conditions, and Sb2 is the fluorescence measured at 380 nm with saturating Ca2+ (2 mM).
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8

Spectroscopic Analyses and Metal Removal

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The progress of the
reactions was monitored by thin layer chromatography (TLC) analysis
on aluminium plates precoated with silica gel 60 F254. Purifications
are carried out by column chromatography using silica gel (200–400
mesh size). Absorption spectra were recorded by using analytical an
UV SPECTRO 2060+ UV–vis spectrophotometer, and fluorescence
spectra were obtained from a Jasco FP 6500 spectrophotometer. Infrared
spectra were studied on a PerkinElmer’s Spectrum 65 FT-IR spectrometer
using KBr pellets as a reference. 1H NMR spectra of the
samples were analysed on a Bruker AVANCE 500 MHz NMR spectrometer.
Multiplicities are abbreviated as s = singlet, d = doublet, t = triplet,
quart = quartet, quint = quintet, sext = sextet, and m = multiplet.
Metal removal data were examined using inductively coupled plasma
ICP–OES 7300 DV, PerkinElmer.
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9

Detailed Characterization of Organic Compounds

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General, Measurement, and Materials. 1 H, 19 F, and 13 C{ 1 H} NMR spectra were recorded using Bruker AVANCE-400 NMR spectrometer and AVANCE-600 NMR spectrometer. Elemental analyses were carried out using a Perkin-Elmer 2400 CHN elemental analyzer and Yanaco CHN coder MT-6 or MT-5. Anhydrous toluene and THF were purchased from Kanto Chemical and used as dry solvents. Crystal Structure Determination Intensity data were collected on a Bruker SMART APEX II ULTRA with Mo Kα radiation. UV-vis absorption spectra in solution states were recorded on a Hitachi U-3900H spectrophotometer. Excitation and emission spectra in solution states were recorded on a Hitachi F-2700 fluorescence spectrophotometer. The PL quantum yields of the emission were measured using a Hamamatsu Photonics C9920-02 absolute PL quantum yield spectrometer. UV-vis absorption spectra and photoluminescence spectra for the vacuum-deposited films were recorded on a Hitachi U-3010 and JASCO FP-6500 spectrophotometer, respectively. The HOMO energy level was estimated by photoelectron yield spectroscopy (PYS) using a Riken Keiki AC-3 spectrometer. Out-of-plane and in-plane XRD measurements were performed using MiniFlex600 and SmartLab diffractometer (Rigaku Corporation, Cu Kα radiation), respectively. The incident angle ω was set to 0.3° for in-plane measurement.
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