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96 protocols using hoechst 33342

1

Immunostaining of Cardiomyocyte Proteins

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Cardiomyocytes were plated on glass-bottom dishes (MatTek Corp., Ashland, MA, USA) for immunofluorescence and confocal imaging. For immunofluorescence analysis, isolated cardiomyocytes were fixed with 4% paraformaldehyde (PFA) for 30 minutes at 4 degrees Celsius. Next, cardiomyocytes were incubated with permeabilization buffer (0.5% Triton X-100, 0.2% Tween-20 in PBS) for 30 minutes at 4 degrees Celsius. Blocking buffer (5% FBS in permeabilization buffer) was then added and incubated for 30 minutes at room temperature. Primary antibodies (listed above) were then added (SERCA2A – 1:500, PLN – 1:1000, RyR2 – 1:1000, DHPR – 1:700). Cardiomyocytes were then incubated with primary antibody overnight at 4°C and fluorophore-conjugated secondary antibody staining (Alexa 647, Molecular Probes) was performed at room temperature for 1 hour in the dark. Nuclear counterstaining was performed using 1 μg/ml Hoechst 33342 (Cell Signaling, #4082) at room temperature for 15 minutes in the dark.
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2

Immunofluorescence Analysis of β-Catenin and E-Cadherin

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Immunofluorescence stainings were performed as previously described [21 (link)] using anti-β-catenin (Cell signaling Technology, 8480) and anti-E-cadherin (Cell signaling Technology, 14472) antibodies and Hoechst 33342 (Cell signaling Technology, 4082) to stain for nuclear. The confocal images were captured by a confocal LEICA SP5-AOBS microscope with a 63X/1.4 NA oil-immersion objective.
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3

Live Cell Cycle Analysis of Larval Eye Discs

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Live GFP-labeled 3rd instar eye-imaginal disc cells were dissected in 1× PBS and simultaneously dissociated with gentle agitation and stained (wrapped in foil) with Hoechst 33342 (Cell Signaling, 500 g/ml) for 2 h using a solution of 450 µl 10× Trypsin-EDTA (Sigma), 50 µl 10× PBS, and 0.5 µl Hoechst 33342. Cells were then passed through a 40 μm cell strainer prior to FACS analysis. Hoechst 33342 expression was analyzed for a minimum of 10,000 GFP-positive cells by flow cytometry on a Becton Dickinson FACS Canto II cytometer using FACSDiva software. Elimination of dead cells and the distribution of cells within G1, S, and G2/M phases of the cell cycle was determined using FlowJo software.
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4

Immunofluorescence Staining of TRPV1 Receptor

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Cells were grown for 24 h on 15 mm glass coverslips in a 12-well plate. Samples were then fixed with 3% PFA in PBS, permeabilized with 0.25% ice-cold TRITON X100 in PBS and blocked with 1% BSA in PBS. The coverslips were stained with a rabbit anti-human TRPV1 antibody (1:250, ab3487-ABCAM; Cambridge, UK) for 1 h at room temperature and then incubated with TRITC-anti rabbit secondary antibody (1:500, ab6718-ABCAM; Cambride, UK) in the dark for 1 h at room temperature. Negative controls were prepared by omitting the primary antibody. Nuclei were stained with 1 µg/mL Hoechst 33342 (#4082-Cell Signaling Technologies; Danvers, MA, USA) and cell membrane with 2 µM PKH67 (MINI67–Sigma-Aldrich; Milan, Italy). Finally, the coverslips were mounted on glass slides using ProLong Gold antifade reagent (Invitrogen, Carlsbad, CA, USA) as mounting medium. Immunofluorescence images were acquired using an Olympus BX51 microscope, whereas the confocal microscopy images were captured using a Leica TCS SP8 Microscope and analyzed with LAS X software (Leica Microsystems GmbH, Wetzlar, Germany).
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5

Apoptosis Evaluation in Cell Cultures

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Forty-eight hours after treatment with HHT, ATO, or their combination, the cells were harvested, washed three times with phosphate-buffered saline (PBS), and prepared as a smear. The cells were immobilized with 4% paraformaldehyde (Biosharp, Hefei, Anhui, China) for 30 min, air-dried, washed with PBS, and permeabilized with 0.5% Triton X-100 (Solarbio, Beijing China) for 30 min. After washing with PBS again, the cells were stained with Hoechst 33342 (Cell Signal Technology, Danvers, MA, USA) for 30 min at room temperature to detect apoptosis; the nuclear morphology change was immediately evaluated using a fluorescence microscope (Olympus, Tokyo, Japan) after a final wash with PBS.
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6

Examining Histone H3K9ac Levels

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MEC cells were seeded in 6-well plates (5×104 cells) with DMEM/High glucose supplemented as previously described and treated with Cephaeline (IC50) in triplicates for 24 and 48h. After, cells were fixed with formaldehyde 4% for 15 min at room temperature. Blockage and cellular permeabilization were performed with 3% (w/v) bovine serum albumin (BSA) and 0.5% (v/v) Triton X-100 in PBS 1X for 1h. Anti- H3K9ac antibody (Cell Signaling Technology, Danvers, MA, USA) was diluted in (0.5% (v/v) Triton X-100 in PBS 1X and 1% (w/v) BSA) and incubated overnight. Subsequently, cells were washed and incubated with Alexa 488 secondary antibody (Cell Signaling Technology, Danvers, MA, USA) following with DNA staining using Hoechst 33342 (Cell Signaling Technology, Danvers, MA, USA). Ten fields of each slide were photographed and quantified. Images were taken using Nikon Eclipse Ti-S microscope and evaluated using Image J software (National Institute of Health, Bethesda, Maryland, USA).
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7

Characterization of Dendritic Cells

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The following antibodies were used (all anti-human): CD207-PE mouse IgG1 (#IM3577) (Beckman Coulter, USA), CD1a-APC mouse IgG1 (BD Biosciences, San Jose, CA, USA), CD1a-APC mouse IgG1 (BD Pharmingen), LEAF purified CD11b-AF488 mouse IgG1 (Biolegend, San Diego, CA, USA), LEAF purified CD11c-PE mouse IgG1 (Biolegend, San Diego, CA, USA) and anti-HIV-1 p24, KC57-RD1-PE mouse IgG1, (Beckman Coulter, USA) IgG1 isotype (0.5 mg/mL) (Thermo Fisher Scientific, USA) and Hoechst 33342 (Cell Signaling Technologies). The following reagents were used: 10E2 (anti-langerin) (20 µg/ml)20 (link). Semen pooled-human-donors (#991-04-P), liquid, pooled form ≥3 donors (Lee Biosolutions).
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8

Aortic Endothelial Morphology Analysis

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Prior to excision, aortae were perfused serially via the left ventricle of the heart with: i) 0.5 mM EDTA in PBS; ii) 4% paraformaldehyde, 7.5% sucrose, 0.5 mM EDTA, in PBS; and iii) 0.5 mM EDTA in PBS, respectively. Dissected aortae were fixed in 4% paraformaldehyde for 30 minutes and then permeablized with 0.1% Triton X-100 in PBS at room temperature, followed by an overnight incubation (4°C) with a rabbit anti-β-Catenin antibody (Sigma #C2206) in 1:1000 diluted blocking solution (Dako-Agilent, K800621, Carpinteria, CA). Secondary anti-rabbit IgG antibody conjugated with Alexa Plus 555 (Thermo #14–387-071, Waltham, MA) at 1:1500 dilution was used for visualization of endothelial borders. Nuclei were counter stained with 1μg/mL Hoechst 33342 (Cell Signaling #4082). Vessels were mounted on a coverslip with ProLong anti-fade mounting medium (Thermo #P36962, Waltham, MA). Images were acquired with confocal microscope (Carl Zeiss) and ZEN 2012 software (Carl Zeiss). Since our cell culture work revealed no impact of sex, composite data from en face staining was typically sampled 4–8 times in aortae isolated from 4–5 mice of either sex. Representative staining in Figure 1 was derived from a male mouse and that in Figure 5 representes a female mouse.
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9

Mitochondrial Staining in Live Cells

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Mitochondria in live cells were stained with either MitoTracker obtained from ThermoFisher (MitoTracker Red, M7512, Carlsbad, CA) or CytoPainter MitoRed from Abcam (#ab176832, Cambridge, MA) according to the manufacturer’s instructions. In brief, the cells were incubated with 1:1000 diluted MitoTracker/MitoRed in a growth medium for 15 minutes at 37°C incubator and followed by 1μg/mL Hoechst 33342 (Cell Signaling #4082) for 5 min at room temperature. Following the incubation, cells were washed in the growth medium twice and images were acquired.
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10

Quantitative Microscopy of A. fumigatus Infection

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For CLSM analysis, 0.5 × 106 ds Red A. fumigatus conidia were applied to the apical surface and at several time points post infection as indicated in the Figure legends or Results, inocula were removed by gentle suction and the well was fixed using 4% paraformaldehyde solution for 10 minutes. After fixation the cells were treated as described above except staining the slides for mucin using rabbit anti-human MUC5B antibody (1:80; Abcam), followed by donkey anti-rabbit IgG (1:50 Biolegend). Again, actin localized to tight junctions was identified by using phalloidin-650 (1:20; Cell Signaling Technology). Cilia were stained using an anti-tubulin antibody (1:10; BD Pharmingen), and nuclei using Hoechst 33342 (Cell Signaling Technology). Images were captured using a Leica SP5 confocal laser scanning microscope and analysed using the LAS AF Lite or Imaris software. For each condition at least 50 cells were analyzed and used for quantifications.
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