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3 protocols using nupage precast 4 12 bis tris gels

1

Enteroid Lysate Preparation for Immunoblotting

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For enteroid lysates, cultures were resuspended in Cell Recovery Solution (Corning) supplemented with 10 μM Y-27632 (Calbiochem) and incubated for 15 min on ice, followed by centrifugation at 550 g for 5 min. Cell pellets were lysed in ice-cold NP-40 lysis buffer (1% vol/vol NP-40, 50 mM Tris HCl pH 7.4, 150 mM NaCl, and 10% vol/vol glycerol) supplemented with complete EDTA-Free Protease Inhibitor Cocktail (Roche), phosphatase inhibitors (1 mM Na3VO4 and 10 mM NaF), and 10 mM N-ethylmaleimide. After lysis, samples were centrifuged for 20 min at 21,130 g to remove debris, and the supernatants were quantitated by using the BCA Protein Assay Kit (Pierce). Lysates were normalized and denatured in LDS Sample Buffer (Invitrogen), followed by resolution on NuPage precast 4–12% Bis-Tris gels (Invitrogen) and transferred to polyvinylidene difluoride for immunoblotting.
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2

CCN3 Protein Detection in Aorta and Intestine

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Total protein was extracted from the aorta or each segment of the intestine by tissue homogenization in a RIPA buffer (1% deoxycholic acid, 0.1% SDS, 1% NP40) containing protease/phosphatase inhibitor cocktail (Pierce). Protein concentrations were determined by BCA protein assay kit (Pierce). Twenty micrograms of aorta extract or 10 μg of intestinal extracts were resolved on NuPage precast 4%–12% Bis-Tris gels (Invitrogen) and transferred to polyvinylidene difluoride membranes (Millipore). The membranes were blocked in 5% skim milk solution, incubated with an anti-CCN3 antibody [14 (link)], and then reacted with an HRP-conjugated mouse anti-rabbit secondary antibody (Jackson). The proteins were visualized using Luminata Forte Western HRP substrate (Millipore). Membranes were reprobed with an anti-β actin primary antibody (Sigma Aldrich Corp.) and an HRP-conjugated goat anti-mouse secondary antibody (Jackson) to show the loading control. Images were acquired using ImageLab (Bio-Rad) and processed using Adobe Photoshop software.
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3

Intein-Mediated Protein Purification Technique

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Harvested cell pellets were re-suspended in buffer B1 (20 mM Tris-HCL, 500 mM NaCl, 1 mM EDTA, pH 8.5) to 10 OD culture/ml, followed by sonication (Ultrasonic crasher, Scientz JY92-IIN, Ningbo, China). The soluble fractions were isolated from the lysates by centrifugation at 11,000 rpm for 10 min at 4 °C. The precipitates were washed twice with buffer B1, resuspended in the same volume of Buffer B3 (20 mM Tris-HCl, 500 mM NaCl, 1 mM EDTA, 40 mM Dithiothreitol, pH 8.5). Intein-mediated cleavage reactions were performed by incubating the samples at 4 °C overnight. Then the soluble and insoluble fractions were separated by centrifugation at 11,000 rpm for 15 min at 4 °C. The protein samples were analyzed by denaturing polyacrylamide gel electrophoresis using precast NuPAGE® precast 4–12% Bis-Tris gels from Invitrogen, followed by staining with Coomassie Brilliant Blue G-250. The compositions and protein concentrations of all samples were determined densitometrically with Quantity One software (Bio-Rad Laboratories, Hercules, CA, USA) using bovine serum albumin (BSA) and aprotinin as standards, and were adjusted according to the loading volume of the protein samples.
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