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49 protocols using cresyl violet solution

1

Mapping Galaninergic Fibers in Rat Dura Mater

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Eight male Wistar rats were used to determine the distribution of GAL-ir nerve fibers in the dura mater. They were anesthetized with isoflurane (Fujifilm Wako Pure Chemical Corporation, Japan) until respiration was markedly suppressed and transvascularly perfused with 50 mL saline followed by 500 mL Zamboni fixative42 (link). The brain with the meninges was dissected and immersed in the same fixative. Then, the samples were immersed overnight in a phosphate-buffered saline containing 20% sucrose and frozen with dry ice. The whole brain was frontally and serially sectioned at 8 µm and thaw-mounted on silane-coated glass slides (n = 4). The caudal 1/3 portion of the brain, including the brainstem and cerebellum, was also horizontally sectioned in four animals. The 480-µm interval sections of the brain were stained with 0.2% cresyl violet solution (Sigma-Aldrich, USA) and subjected to immunohistochemistry to demonstrate the structure of the dura mater and the distribution of GAL and other substances within it.
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2

Cresyl Violet Staining for Neuron Density

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The brains of the experimental animals were transcardially perfused with fixative solution containing 4% paraformaldehyde in 0.1 M phosphate buffer pH 7.3 and postfixed in the same fixative overnight at 4°C. Then, they were immersed in a cryoprotectant containing 30% sucrose (Merck, Germany) solution at 4°C for 72 h. Serial sections of the frozen tissues were cut at 20 μm thick using cryostat (Thermo Scientific™ HM525 Cryostat). All sections were placed on slides coated with 0.3% gelatin containing 0.05% aluminium potassium sulfate (Sigma-Aldrich, USA). Following this step, the sections were stained with 0.2% cresyl violet solution (Sigma-Aldrich, USA) for 8 minutes, rinsed with distilled water, and dehydrated with 70%, 95%, and 100% alcohols, respectively (RCI LabScan, Thailand). Then, the sections were immersed in xylene 2 times for 5 minutes each and mounted with DPX mountant (Merck, Germany). The determination of neuron density was performed based on the stereotaxic coordinates from the rat brain atlas as the following: anteroposterior 2.5-4.5 mm and mediolateral 0.2-1.0 mm [21 ] under the Olympus light microscope model BH-2 (Japan) at 40x magnification. Results were expressed as density of neurons per 255 μm2.
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3

Spinal Cord Injury Histological Analysis

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At the end of the last behavioral test done on the 28th post-surgery day, the rats were euthanized using overdose of sodium pentobarbital (240 mg/ml). The rats were perfused using isotonic solution of sodium chloride (0.9% w/v of NaCl) followed by addition of 500 ml of paraformaldehyde (PFA) (Sigma Aldrich USA) (4%) in 0.1 M PBS (pH 7.4). The injured site and a 1 cm portion of spinal cord was dissected and fixed in fixing media for 24 h at 4ºC. The tissues after fixing were imbedded in paraffin. From the paraffin embedded a section of 10 µM thickness was obtained and mounted on slides. The obtained tissue section was stained with cresyl-violet solution (Sigma Aldrich USA) (0.5%) and viewed under a microscope (Olympus, NY). The lesion areas and the spared tissue areas in the spinal cord tissue sections were identified using Image pro software (Media, USA). The spared tissue area was the part of spinal cord section which showed normal anatomical structure, whereas the area with a low percentage of spared tissue was determined as the injured epicenter.
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4

Cresyl Violet Staining of Brain Sections

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Brain sections were stained in 0.25% cresyl violet solution (Sigma-Aldrich) for 15 min at 65 °C. Then, sections were decolorized in ethanol, the decolorization time depends on the strength of color. After decolorizing, sections were dehydrated in ethanol for 5 min, followed by a 10 min wash in xylene and mounted in a neutral balsam.
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5

Quantifying the Suprachiasmatic Nucleus

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Coronal brain sections (20–30 μm) containing the entire left and right SCN were stained with 1% cresyl violet solution (Sigma). Photographs were acquired on a Zeiss Axioskop equipped with a Zeiss colour Axiocam using a 10× objective, to include both left and right SCN, and the AxioVision software (Zeiss, Pleasanton, CA) and then, used to estimate the area, height and width of the SCN. Measurements (in μm) were obtained using the AxioVision. For each animal, the three measurements were performed in consecutive slices of the SCN. Those from the 2 most central sections (largest area), the 2 sections anterior and 3 posterior to these were summed (a total of 7 consecutive sections). No significant differences between the measurements in the left or right SCN were found so the results were averaged.
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6

Cresyl Violet Staining of Rat Hippocampus

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On POD 7, the rats were transcardially perfused with 4% paraformaldehyde (PFA). Their brains were isolated, post-fixed with 4% PFA, dehydrated with a graded ethanol series, embedded in paraffin, and serially sectioned at 5-µm thickness using a microtome (RM2255, Leica, Nussloch, Germany). Two slides were randomly selected from the hippocampus-bearing tissue collections of each rat, deparaffinized in xylene, hydrated by a decreasing ethanol gradient series, and washed twice in distilled water. The slides were subsequently stained with a 0.1% cresyl violet solution (Sigma-Aldrich). The hippocampal CA1 regions were photographed at 200x magnification by a digital camera connected to a light microscope (DM4, Leica). From the images, the number of intact neurons, which included those with clear nuclei and large cell bodies, in the CA1 subfield (localized within 300 μm) were counted and averaged.
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7

Nissl Staining for TBI Perilesional Analysis

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Nissl staining was performed with 0.1% cresyl violet solution (Sigma-Aldrich) using a standard protocol to evaluate the peri-impact injury of our TBI model 26 (link), 27 (link). From each perfused brain, six coronal sections between the anterior edge and posterior edge of the TBI impact area were collected and processed for Nissl staining. The peri-impact area was defined as the region in the cortex immediately surrounding the TBI impact area, starting at AP +2.0 mm and ending at AP -3.8 mm posterior from the bregma. Every sixth coronal tissue section was chosen at random to quantify cell survival in the peri-impact area. Brain sections were examined using a light microscope (Keyence). Neuronal survival in the peri-impact area of the brain was quantified using a computer-assisted image analysis system (NIH Image Software, USA) and was expressed as a percentage of the ipsilateral hemisphere compared to the contralateral hemisphere 27 (link).
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8

Nissl Staining for Neuronal Injury Evaluation

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After the MWM test, routine Nissl staining was performed to evaluate the neuronal injury induced by 2VO. Briefly, rats were anesthetized with sodium pentobarbital and transcardially perfused with saline and 4% paraformaldehyde (PFA). The isolated whole brains were fixed in 4% PFA for 24 h at 4°C and then cryoprotected in ascending sucrose series gradient in phosphate-buffered saline. The slide-mounted brain sections (4 μm thick) were differentiated in 95% ethyl alcohol, rinsed in 75% ethyl alcohol and distilled water, and stained with 0.1% cresyl violet solution (Sigma, St. Louis, MI, United States). After a rinse in distilled water and dehydration in 95 and 100% ethyl alcohol, the sections were finally cleared in xylene for 2–3 min and mounted with Permount (Sigma, St. Louis, MI, United States). Images were acquired using a fluorescence microscope (Olympus, Tokyo, Japan).
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9

Cresyl Violet Staining of Outer Hair Cells

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At 8 DIV, cresyl violet staining was performed using a slightly modified protocol published by Cho et al. (85 (link)). OHCs were fixed at room temperature with 4% paraformaldehyde (PFA) in 0.1 M phosphate-buffer (PB; pH 7.4) for 30 min and processed for staining on the insert membrane. After fixation, OHCs were washed three times for 5 min in phosphate buffered saline (PBS, pH 7.4). OHCs were then immersed in 0.75% cresyl violet solution (Sigma Aldrich, St. Louis, MO, USA) for 7 min. After rinsing in distilled water for 30 s, OHCs were dehydrated in a graded series of ethanol (70, 90, 95, and 100%) for 1 min at each concentration, and cleared in xylene (two times for 10 min). Stained OHCs were mounted between microscope slides and coverslips using DPX mounting medium (Sigma Aldrich). Light microscope images were obtained using a Nikon E600 epifluorescent microscope equipped with the Sight DS-Fi1 digital color camera (Nikon Instrument Inc.).
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10

Cresyl Violet Staining and Neuronal Counting

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The 5 μm transverse frozen sections were dried and then soaked overnight in a 1:1 mixture of alcohol and chloroform in the dark at 22 ± 1°C. The following day, the sections were rehydrated, and stained in 0.1% cresyl violet solution (Sigma, St. Louis, MO, USA) for 5 min. Differentiation, dehydration, and rinsing was performed as described previously (Li H.-T. et al., 2015 (link)). The sections were then mounted with Permount (Beyotime Institute of Biotechnology, Shanghai, China) and observed under a light microscope (Olympus) equipped with a CCD camera (Leica DMI4000B, Germany). Surviving neurons were counted using Photoshop CS3. The experiments were performed six independent times.
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