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63 protocols using p enos

1

Protein Expression and Detection Protocol

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Following the treatments, cells were washed twice with cold PBS and lysed in buffer containing 50 mM Tris-HCl, pH 7.5, 150 mM NaCl, 10 mM tetrasodium phosphate, 40 mM β-glycerophosphate, 2 mM EDTA, 2 mM EGTA, 1% Triton X, 10% glycerol, 50 mM sodium fluoride, 0.2 mM sodium orthovanadate, and protease inhibitors. The cell lysates were transferred to 1.5-mL Eppendorf tubes, homogenized, and centrifuged at 10,000×g for 5 min at 4°C. The supernatant was transferred to a fresh tube, and protein concentration was determined using the Bio-Rad Protein Assay Reagent (Bio-Rad, Hercules, CA). Equal amounts of protein samples were resolved on SDS-polyacrylamide gel electrophoresis and transferred onto Amersham Hybond ECL 0.45 μM nitrocellulose membranes (GE Healthcare Bio-Sciences). The membranes were immunoblotted with actin, AMPK, P-AMPKαThr172, Bcl-2, caspase 3 full length, eNOS, P-eNOS (Cell Signaling, Danvers, MA), AT1R, AT2R, or p53 (Santa Cruz, Dallas, TX) antibodies, followed by secondary antibodies. The signals were visualized using Thermo Scientific Pierce ECL Western Blotting Detection reagents (Thermo Fisher Scientific) at VersaDoc 3000 Gel Imaging System (Bio-Rad, Hercules, CA).
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2

Liver Proteome Analysis by Western Blot

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Liver tissue was homogenized in HEPES buffer, and proteins were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred to polyvinylidene fluoride or nitrocellulose membranes. Membranes were immunoblotted overnight at 4 °C with antibodies against ubiquitin (U5379, Sigma-Aldrich, Madrid, Spain), Rpt1, 20S core subunits (α5/α7, β1, β5, β5i, and β7) (BML-PW 8895 and BML-PW8825, respectively, ENZO Life Sciences, Madrid, Spain), AMPK (#ab80039) and p-AMPK (#133448) (Abcam, Cambridge, UK). Antibodies against e-NOS/NOS (#610297, BD Biosciences, Madrid, Spain) and P-eNOS (#9571, Cell Signalling, Leiden, The Netherlands) were also used. Membranes were washed afterwards and incubated 1 h at room temperature with secondary antibody. Detection was performed with anti-IgG-HRP (Santa Cruz Biotechnology, Inc., Heidelberg, Germany). Signals were detected by enhanced chemiluminescence and quantified by scanning GS800 calibrated densitometer (Biorad, Madrid, Spain). Both β-actin and α-tubulin were used as loading controls.
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3

Endothelial Cell Response to ADSC Secretome and PRP

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Human umbilical vein endothelial cells (Takara Bio Shiga, Japan) were cultured in conditioned medium of ADSCs treated with 0%, 5%, or 10% PRP under normoxic or hypoxic conditions. The cells were collected and lysed in RIPA buffer. After the removal of insoluble materials, protein concentrations were determined using a Bio-Rad Protein Assay Dye Reagent Concentrate (Bio-Rad, Calif). Proteins were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and electrotransferred to polyvinylidene fluoride membranes. The membranes were probed with primary antibodies against eNOS (BD Transduction Laboratories, Franklin Lakes, NJ), phosphorylated eNOS (p-eNOS, Ser1177), phosphorylated VEGF receptor 2 (Tyr1175; Cell Signaling Technology, Danvers), VEGFA (VG-1, Abcam Cambridge, United Kingdom), and β-actin. Blots were developed using Pierce ECL Plus western blotting substrate (Thermo Fisher Scientific, Mass). The intensities of the bands were quantified using the ImageJ software (NIH). In some experiments, ADSCs were also used for western blot analyses.
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4

Antibody Generation and Validation for LRRC8A

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Rabbit polyclonal anti-LRRC8A antibody was generated against the epitope QRTKSRIEQGIVDRSE (Pacific Antibodies) (Kang et al., 2018 (link)). All other primary antibodies were purchased from Cells Signaling: anti-ß-actin (#8457), Total Akt (#4685S), Akt1 (#2938), Akt2 (#3063), p-eNOS (#9571), Total eNOS (#32027), p-AS160 (#4288), p-p70 S6 Kinase (#9205S), pS6 Ribosomal (#5364S), GAPDH (#5174), pErk1/2 (#9101), Total Erk1/2 (#9102). Anti-LRRC8A antibody was custom made as described previously (Zhang et al., 2017 (link); Kang et al., 2018 (link)). A second p-eNOS antibody was purchased from Invitrogen (Cat#PA5-104858) and used to compare with anti-p-eNOS from Cell Signaling (#9571) for p-eNOS IF staining. Purified mouse anti-Grb2 was purchased from BD (610111) and Santa Cruz (#sc-255). Rabbit IgG was purchased from Santa Cruz (sc-2027). Anti-CD31 was purchased from Thermo Fisher (MA3105).
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5

Antibody Profiling of Endothelial Cells

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CRIF1, GCH1, SPR, DHFR, and p16 antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). PTS antibodies were purchased from Thermo Fisher Scientific (Waltham, MA, USA). P-eNOS, T-eNOS, P-Akt, and T-Akt antibodies were acquired from Cell Signaling Technology (Beverly, MA, USA). Whole HUVECs and lung endothelial cell lysates from 8-week-old WT and CRIF1 knockout mice were collected for homogenization by RIPA buffer obtained from Cell Signaling. Then, 20 μg of the homogenates were used in the Western blotting experiments.
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6

Protein Expression Analysis via Western Blot

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Following the treatments, cells were washed twice with cold PBS and lysed in buffer containing 50 mM Tris-HCl, pH 7.5, 150 mM NaCl, 10 mM tetrasodium phosphate, 40 mM β-glycerophosphate, 2 mM ethylenediaminetetraacetate (EDTA), 2 mM ethylene glycol-bis(2-aminoethylether)-N,N,N′,N′-tetraacetate (EGTA), 1% Triton X, 10% glycerol, 50 mM sodium fluoride, 0.2 mM sodium orthovanadate and protease inhibitors. The cell lysates were transferred to 1.5-ml Eppendorf tubes, homogenized and centrifuged at 10,000 × g for 5 min. at 4°C. The supernatant was transferred to a fresh tube, and protein concentration was determined using the Bio-Rad Protein Assay Reagent (Bio-Rad). Equal amounts of protein samples were resolved on SDS-PAGE and transferred onto Amersham Hybond ECL 0.45 μM nitrocellulose membranes (GE Healthcare Bio-Sciences, Piscataway, NJ, USA). The membranes were immunoblotted with actin, AMPK, P-AMPKαThr172, Bcl-2, caspase 3 full length, eNOS, P-eNOS (Cell Signaling, Danvers, MA, USA), AT1R, AT2R or p53 (Santa Cruz, Dallas, TX, USA) antibodies, followed by secondary antibodies. The signals were visualized using Thermo Scientific Pierce ECL Western Blotting Detection reagents (Thermo Fisher Scientific) at VersaDoc 3000 Gel Imaging System (Bio-Rad).
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7

Protein Expression Analysis in Myocardial Tissue

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Western blot was performed as described in our previous publications [21 (link)]. In brief, the myocardial tissues were lysed with ice-cold RIPA buffer (Beyotime Biotechnology, Shanghai, China) containing 1% protease inhibitor cocktail (Sigma-Aldrich, MO, USA). After protein concentration measurement by the modified Bradford assay (Bio-Rad Laboratories, Hercules, CA, USA), the proteins were separated by SDS-polyacrylamide gel electrophoresis and transferred onto nitrocellulose membranes. Then, they were probed with antibodies against cleaved caspase-3, gp91phox, iNOS, p-eNOS, eNOS, Notch1 ICD, PCNA, Hes1, Pten, p-Akt, Akt, and β-actin (1 : 1000, Cell Signaling Technology, MA, USA) overnight (4°C) followed by incubation with HRP-conjugated secondary antibodies (1 : 5000 Zhongshan Biotechnology, Beijing, China) for 1 h (room temperature). The SuperSignal ECL kit (Thermo Fisher Scientific, Rockville, MD, USA) was employed to detect the antigen-antibody complexes. The bands were quantified and analyzed using an image analyzer Quantity One System (Bio-Rad, CA, USA). The results were expressed as density values normalized to β-actin.
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8

Protein Quantification and Immunoblotting

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Protein quantification was evaluated as previously described 20 (link). Protein samples obtained from LV were analyzed by immunoblotting using specific antibodies to eNOS (BD Biosciences), P-eNOS (Cell Signaling), GRK2 (Santa Cruz), P-GRK2 (Millipore), GPX-1 (Abcam), SOD1 (Abcam), Akt (Cell Signaling), P-Akt (Cell Signaling)
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9

Immunoblotting Antibody Specifications

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Antibodies used for immunoblots were purchased from the indicated companies: Catalase (1:3000 dilution, #ab1877) (Abcam), p-Akt (Ser473) (1:2000 dilution, #9272), Akt (1:2000 dilution, #9271), p-eNOS (Ser1177) (1:1000 dilution, #9571), eNOS (1:1000 dilution, #9586), p-FoxO1 (Thr24, Ser256) (1:1000 dilution, #9464 and #9461), FoxO3 (1:1000 dilution, #9467), GAPDH (1:3000 dilution, #2118), Histone H3 (1:500 dilution, #9715), Lamin A/C (1:5000 dilution, #4777), p-Mst1 (Thr183) (1:1000 dilution, #3681), p-YAP (Ser127) (1:1000 dilution, #4911), YAP (1:2000 dilution, #4912) (Cell Signaling Technology), FoxO1 (1:2000 dilution, #1874-1) (epitomics), α-tubulin (1:5000 dilution, #T-6199), FLAG (1:2000 dilution, #F3165) (Sigma), MnSOD (1:3000 dilution, #611580), Mst1 (1:2000 dilution, #611052) (BD Biosciences), and Lats2 (1:1000 dilution, #ab54073 and #A300-479A) (Abcam and Bethyl Laboratories). The p-Lats2 (S872 and T1041) (1:500 dilution) antibodies were generated as described41 (link).
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10

Western Blot Analysis of UPR Markers

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The cells were lysed with RIPA buffer (Thermo Fisher Scientific, United States). A BCA protein assay kit (Thermo Fisher Scientific, United States) was used to detect the concentration of total proteins. Equal protein (50 μg) was loaded on a 10% SDS gel and transferred to polyvinylidene fluoride membranes. Subsequently, membranes were blocked in 5% milk in TBST for 2 h. Primary antibodies against PERK (1:2,000; Genetex, United States), XBP1 (1:2,000; Sigma, CA, United States), ATF6 (1:2,000; Sigma, CA, United States), CHOP (1:2,000; Sigma, CA, United States), Caspase-12 (1:2,000; Sigma, CA, United States), JNK (1:2,000; Sigma, CA, United States), GRP78 (1:5,000; Sigma, CA, United States), p-eNOS (1:5,000; Cell Signaling, MA, United States), CaMKII (1:5,000; Genetex, United States), P-gp (1:5,000; Sigma, CA, United States), MMP9 (1:5,000; Sigma, CA, United States), and β-actin (1:5,000; Abcam, MA, United States) were utilized to incubate membranes at 4°C overnight. Membranes were washed and incubated with goat anti-rabbit IgG horseradish peroxidase-conjugated secondary antibody (1:5,000; Proteintech, China) for 2 h. Western blot bands were analyzed by Bio-rad Image Lab (v5.2.1).
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